Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP28Q9H239 AC060814.1-201ENST00000554326 538 ntBASIC20.05■□□□□ 0.8
MMP28Q9H239 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP28Q9H239 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP28Q9H239 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP28Q9H239 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.05■□□□□ 0.8
MMP28Q9H239 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP28Q9H239 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.03■□□□□ 0.8
MMP28Q9H239 GUSBP5-202ENST00000510805 1989 ntBASIC20.03■□□□□ 0.8
MMP28Q9H239 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MMP28Q9H239 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
MMP28Q9H239 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 PKD1P6-201ENST00000343738 4769 ntBASIC20.03■□□□□ 0.8
MMP28Q9H239 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
MMP28Q9H239 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
MMP28Q9H239 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MMP28Q9H239 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MMP28Q9H239 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP28Q9H239 FOXO3B-201ENST00000395675 1928 ntBASIC20.02■□□□□ 0.8
MMP28Q9H239 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.02■□□□□ 0.8
MMP28Q9H239 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.02■□□□□ 0.8
MMP28Q9H239 AC022413.1-201ENST00000624602 984 ntBASIC20.02■□□□□ 0.8
MMP28Q9H239 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MMP28Q9H239 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MMP28Q9H239 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
MMP28Q9H239 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
MMP28Q9H239 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.01■□□□□ 0.79
MMP28Q9H239 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MMP28Q9H239 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MMP28Q9H239 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MMP28Q9H239 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP28Q9H239 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
MMP28Q9H239 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP28Q9H239 AL359504.2-201ENST00000605506 1601 ntBASIC19.99■□□□□ 0.79
MMP28Q9H239 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP28Q9H239 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.99■□□□□ 0.79
MMP28Q9H239 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP28Q9H239 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.99■□□□□ 0.79
MMP28Q9H239 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.99■□□□□ 0.79
MMP28Q9H239 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MMP28Q9H239 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
MMP28Q9H239 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.98■□□□□ 0.79
MMP28Q9H239 GPX1-201ENST00000419349 1106 ntBASIC19.98■□□□□ 0.79
MMP28Q9H239 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC19.98■□□□□ 0.79
MMP28Q9H239 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.98■□□□□ 0.79
MMP28Q9H239 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MMP28Q9H239 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MMP28Q9H239 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MMP28Q9H239 RARRES2P2-201ENST00000394842 485 ntBASIC19.97■□□□□ 0.79
MMP28Q9H239 AL157400.5-201ENST00000507624 621 ntBASIC19.97■□□□□ 0.79
MMP28Q9H239 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.97■□□□□ 0.79
MMP28Q9H239 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MMP28Q9H239 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MMP28Q9H239 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
MMP28Q9H239 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MMP28Q9H239 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.96■□□□□ 0.79
MMP28Q9H239 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.96■□□□□ 0.79
MMP28Q9H239 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MMP28Q9H239 AC092296.2-201ENST00000589470 999 ntBASIC19.96■□□□□ 0.79
MMP28Q9H239 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.96■□□□□ 0.79
MMP28Q9H239 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms