Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NKX6-3A6NJ46 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 AC004448.1-201ENST00000458332 883 ntBASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NKX6-3A6NJ46 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 MTDHP2-201ENST00000601468 714 ntBASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.17■□□□□ 0.66
NKX6-3A6NJ46 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 SNX5-217ENST00000606557 1087 ntBASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 AC092028.1-203ENST00000608262 953 ntBASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.16■□□□□ 0.66
NKX6-3A6NJ46 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 TSPY9P-201ENST00000440215 945 ntBASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 TSPY11P-201ENST00000442607 1045 ntBASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NKX6-3A6NJ46 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX6-3A6NJ46 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX6-3A6NJ46 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NKX6-3A6NJ46 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.66
NKX6-3A6NJ46 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.14■□□□□ 0.66
NKX6-3A6NJ46 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NKX6-3A6NJ46 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
NKX6-3A6NJ46 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
NKX6-3A6NJ46 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms