Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 MIR638-201ENST00000385237 100 ntBASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 AC110285.6-201ENST00000617652 491 ntBASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 SHF-207ENST00000560540 2062 ntTSL 5 BASIC18.75■□□□□ 0.59
TRAV40A0A0B4J280 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV40A0A0B4J280 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 AL022069.1-201ENST00000568025 1636 ntBASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
TRAV40A0A0B4J280 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRAV40A0A0B4J280 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 SRD5A1P1-201ENST00000442297 786 ntBASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TRAV40A0A0B4J280 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.71■□□□□ 0.58
TRAV40A0A0B4J280 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.7■□□□□ 0.58
TRAV40A0A0B4J280 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
TRAV40A0A0B4J280 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.68■□□□□ 0.58
TRAV40A0A0B4J280 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.67■□□□□ 0.58
TRAV40A0A0B4J280 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms