Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.97■□□□□ 0.79
ABCA4P78363 AP001330.3-201ENST00000520123 633 ntBASIC19.97■□□□□ 0.79
ABCA4P78363 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
ABCA4P78363 AC105265.2-201ENST00000467189 838 ntBASIC19.97■□□□□ 0.79
ABCA4P78363 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 AC097381.1-201ENST00000429019 1296 ntBASIC19.96■□□□□ 0.79
ABCA4P78363 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.96■□□□□ 0.79
ABCA4P78363 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
ABCA4P78363 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ABCA4P78363 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.95■□□□□ 0.78
ABCA4P78363 MIR6821-201ENST00000617625 74 ntBASIC19.95■□□□□ 0.78
ABCA4P78363 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
ABCA4P78363 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.95■□□□□ 0.78
ABCA4P78363 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ABCA4P78363 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.95■□□□□ 0.78
ABCA4P78363 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
ABCA4P78363 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.94■□□□□ 0.78
ABCA4P78363 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.94■□□□□ 0.78
ABCA4P78363 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ABCA4P78363 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ABCA4P78363 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.93■□□□□ 0.78
ABCA4P78363 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ABCA4P78363 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ABCA4P78363 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ABCA4P78363 MIR939-201ENST00000401314 82 ntBASIC19.93■□□□□ 0.78
ABCA4P78363 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.93■□□□□ 0.78
ABCA4P78363 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.93■□□□□ 0.78
ABCA4P78363 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ABCA4P78363 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA4P78363 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.92■□□□□ 0.78
ABCA4P78363 AL136162.1-201ENST00000607711 1078 ntBASIC19.92■□□□□ 0.78
ABCA4P78363 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.92■□□□□ 0.78
ABCA4P78363 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA4P78363 SLC6A10P-202ENST00000431994 2058 ntBASIC19.92■□□□□ 0.78
ABCA4P78363 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.92■□□□□ 0.78
ABCA4P78363 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ABCA4P78363 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
ABCA4P78363 RASA4CP-201ENST00000424092 1398 ntBASIC19.91■□□□□ 0.78
ABCA4P78363 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA4P78363 AC004448.1-201ENST00000458332 883 ntBASIC19.91■□□□□ 0.78
ABCA4P78363 DUX4L19-201ENST00000557448 1267 ntBASIC19.91■□□□□ 0.78
ABCA4P78363 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA4P78363 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ABCA4P78363 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.91■□□□□ 0.78
ABCA4P78363 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.91■□□□□ 0.78
ABCA4P78363 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.91■□□□□ 0.78
ABCA4P78363 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.9■□□□□ 0.78
ABCA4P78363 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.9■□□□□ 0.78
ABCA4P78363 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.9■□□□□ 0.78
ABCA4P78363 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ABCA4P78363 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.9■□□□□ 0.78
ABCA4P78363 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.9■□□□□ 0.78
ABCA4P78363 AL136967.2-201ENST00000623968 743 ntBASIC19.9■□□□□ 0.78
ABCA4P78363 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.89■□□□□ 0.78
ABCA4P78363 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.89■□□□□ 0.78
ABCA4P78363 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.89■□□□□ 0.77
ABCA4P78363 SERBP1P1-201ENST00000396021 1160 ntBASIC19.89■□□□□ 0.77
ABCA4P78363 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ABCA4P78363 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ABCA4P78363 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
ABCA4P78363 SRD5A1P1-201ENST00000442297 786 ntBASIC19.88■□□□□ 0.77
ABCA4P78363 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.88■□□□□ 0.77
ABCA4P78363 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.88■□□□□ 0.77
ABCA4P78363 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
ABCA4P78363 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ABCA4P78363 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.87■□□□□ 0.77
ABCA4P78363 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.87■□□□□ 0.77
ABCA4P78363 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.87■□□□□ 0.77
ABCA4P78363 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.87■□□□□ 0.77
ABCA4P78363 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 AL121749.1-202ENST00000609313 2153 ntBASIC19.87■□□□□ 0.77
ABCA4P78363 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ABCA4P78363 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms