Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 LBH-205ENST00000407930 756 ntTSL 2 BASIC26.76■■□□□ 1.87
PCDHA1Q9Y5I3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.76■■□□□ 1.87
PCDHA1Q9Y5I3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
PCDHA1Q9Y5I3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.76■■□□□ 1.87
PCDHA1Q9Y5I3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 AC022211.4-201ENST00000625094 2161 ntBASIC26.75■■□□□ 1.87
PCDHA1Q9Y5I3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
PCDHA1Q9Y5I3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 AC010997.5-201ENST00000609182 354 ntBASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
PCDHA1Q9Y5I3 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.72■■□□□ 1.87
PCDHA1Q9Y5I3 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA1Q9Y5I3 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA1Q9Y5I3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.72■■□□□ 1.87
PCDHA1Q9Y5I3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.72■■□□□ 1.87
PCDHA1Q9Y5I3 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 MTDHP2-201ENST00000601468 714 ntBASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
PCDHA1Q9Y5I3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PCDHA1Q9Y5I3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PCDHA1Q9Y5I3 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.7■■□□□ 1.86
PCDHA1Q9Y5I3 SNX5-217ENST00000606557 1087 ntBASIC26.7■■□□□ 1.86
PCDHA1Q9Y5I3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA1Q9Y5I3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA1Q9Y5I3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHA1Q9Y5I3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA1Q9Y5I3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 AC020928.2-201ENST00000588717 2197 ntBASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHA1Q9Y5I3 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
PCDHA1Q9Y5I3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC26.64■■□□□ 1.86
PCDHA1Q9Y5I3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC26.64■■□□□ 1.86
PCDHA1Q9Y5I3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC26.64■■□□□ 1.86
PCDHA1Q9Y5I3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC26.64■■□□□ 1.86
PCDHA1Q9Y5I3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
PCDHA1Q9Y5I3 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHA1Q9Y5I3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms