RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 NISCHQ9Y2I1 1504 aa54.43■■■■■ 6.3
HOMER3-205ENST00000542541 CCDC180Q9P1Z9 1646 aa47.97■■■■■ 5.27
HOMER3-205ENST00000542541 ABCC9O60706 1549 aa46.4■■■■■ 5.02
HOMER3-205ENST00000542541 ZCCHC6Q5VYS8 1495 aaKnown RBP45.48■■■■■ 4.87
HOMER3-205ENST00000542541 DCAF8L2P0C7V8 631 aa45.29■■■■■ 4.84
HOMER3-205ENST00000542541 DCAF1Q9Y4B6 1507 aa45.08■■■■■ 4.81
HOMER3-205ENST00000542541 NACADO15069 1562 aa44.99■■■■■ 4.79
HOMER3-205ENST00000542541 MYO15BQ96JP2 1530 aa44.99■■■■■ 4.79
HOMER3-205ENST00000542541 RB1CC1Q8TDY2 1594 aa44.83■■■■■ 4.77
HOMER3-205ENST00000542541 UNC13AQ9UPW8 1703 aa44.05■■■■■ 4.64
HOMER3-205ENST00000542541 SCRIBQ14160 1630 aa43.84■■■■■ 4.61
HOMER3-205ENST00000542541 BICRAQ9NZM4 1560 aa43.6■■■■■ 4.57
HOMER3-205ENST00000542541 SHROOM4Q9ULL8 1493 aa43.51■■■■■ 4.56
HOMER3-205ENST00000542541 PABPN1Q86U42 306 aaKnown RBP eCLIP43.4■■■■■ 4.54
HOMER3-205ENST00000542541 EIF4G1Q04637 1599 aaKnown RBP42.33■■■■■ 4.37
HOMER3-205ENST00000542541 CECR2Q9BXF3 1484 aa42.29■■■■■ 4.36
HOMER3-205ENST00000542541 DNAJC5BQ9UF47 199 aa42.21■■■■■ 4.35
HOMER3-205ENST00000542541 BAZ1AQ9NRL2 1556 aaPredicted RBP42.14■■■■■ 4.34
HOMER3-205ENST00000542541 CC2D2AQ9P2K1 1620 aa42.06■■■■■ 4.32
HOMER3-205ENST00000542541 SMARCA4P51532 1647 aa42.02■■■■■ 4.32
HOMER3-205ENST00000542541 MROH2BQ7Z745 1585 aa41.93■■■■■ 4.3
HOMER3-205ENST00000542541 RSF1Q96T23 1441 aaPredicted RBP41.79■■■■■ 4.28
HOMER3-205ENST00000542541 ATAD2BQ9ULI0 1458 aa41.64■■■■■ 4.26
HOMER3-205ENST00000542541 SMARCA2P51531 1590 aa41.64■■■■■ 4.26
HOMER3-205ENST00000542541 PEG3Q9GZU2 1588 aa41.61■■■■■ 4.25
HOMER3-205ENST00000542541 NCAPD3P42695 1498 aa41.53■■■■■ 4.24
HOMER3-205ENST00000542541 WIZO95785 1651 aa41.48■■■■■ 4.23
HOMER3-205ENST00000542541 SUPT5HO00267 1087 aaKnown RBP41.42■■■■■ 4.22
HOMER3-205ENST00000542541 BAZ1BQ9UIG0 1483 aaKnown RBP41.36■■■■■ 4.21
HOMER3-205ENST00000542541 HMGXB3Q12766 1538 aa41.35■■■■■ 4.21
HOMER3-205ENST00000542541 TOP2AP11388 1531 aaKnown RBP41.14■■■■■ 4.18
HOMER3-205ENST00000542541 CCDC88BA6NC98 1476 aa40.68■■■■■ 4.1
HOMER3-205ENST00000542541 CADPSQ9ULU8 1353 aa40.39■■■■■ 4.06
HOMER3-205ENST00000542541 NESP48681 1621 aa40.35■■■■■ 4.05
HOMER3-205ENST00000542541 CFTRP13569 1480 aa40.28■■■■■ 4.04
HOMER3-205ENST00000542541 LAMC3Q9Y6N6 1575 aa40.28■■■■■ 4.04
HOMER3-205ENST00000542541 PDS5BQ9NTI5 1447 aa40.04■■■■■ 4
HOMER3-205ENST00000542541 PRDM2Q13029 1718 aa39.99■■■■□ 3.99
HOMER3-205ENST00000542541 KIF21AQ7Z4S6 1674 aa39.96■■■■□ 3.99
HOMER3-205ENST00000542541 FANCD2Q9BXW9 1451 aa39.88■■■■□ 3.97
HOMER3-205ENST00000542541 ERCC6Q03468 1493 aa39.87■■■■□ 3.97
HOMER3-205ENST00000542541 CEP164Q9UPV0 1460 aa39.76■■■■□ 3.96
HOMER3-205ENST00000542541 THOC2Q8NI27 1593 aaKnown RBP39.7■■■■□ 3.95
HOMER3-205ENST00000542541 MRC2Q9UBG0 1479 aa39.53■■■■□ 3.92
HOMER3-205ENST00000542541 WDR62O43379 1518 aa39.44■■■■□ 3.9
HOMER3-205ENST00000542541 ABCC8Q09428 1581 aa39.43■■■■□ 3.9
HOMER3-205ENST00000542541 URB2Q14146 1524 aaKnown RBP39.41■■■■□ 3.9
HOMER3-205ENST00000542541 WRNQ14191 1432 aaPredicted RBP eCLIP39.4■■■■□ 3.9
HOMER3-205ENST00000542541 CUX2O14529 1486 aa39.34■■■■□ 3.89
HOMER3-205ENST00000542541 DNMBPQ6XZF7 1577 aa39.32■■■■□ 3.89
HOMER3-205ENST00000542541 TOPBP1Q92547 1522 aa39.31■■■■□ 3.88
HOMER3-205ENST00000542541 CUX1P39880 1505 aa39.29■■■■□ 3.88
HOMER3-205ENST00000542541 TOP2BQ02880 1626 aa39.17■■■■□ 3.86
HOMER3-205ENST00000542541 SYNJ1O43426 1573 aa39.16■■■■□ 3.86
HOMER3-205ENST00000542541 TRIM41Q8WV44 630 aa39.12■■■■□ 3.85
HOMER3-205ENST00000542541 BIVM-ERCC5R4GMW8 1640 aa39.12■■■■□ 3.85
HOMER3-205ENST00000542541 CHIC1Q5VXU3 224 aa39.11■■■■□ 3.85
HOMER3-205ENST00000542541 FGD5Q6ZNL6 1462 aa39.06■■■■□ 3.84
HOMER3-205ENST00000542541 POLA1P09884 1462 aaPredicted RBP39.03■■■■□ 3.84
HOMER3-205ENST00000542541 SOGA1O94964 1423 aa38.96■■■■□ 3.83
HOMER3-205ENST00000542541 IFT140Q96RY7 1462 aa38.9■■■■□ 3.82
HOMER3-205ENST00000542541 RAD54L2Q9Y4B4 1467 aa38.86■■■■□ 3.81
HOMER3-205ENST00000542541 TARBP1Q13395 1621 aaKnown RBP38.83■■■■□ 3.81
HOMER3-205ENST00000542541 ABCA10Q8WWZ4 1543 aa38.73■■■■□ 3.79
HOMER3-205ENST00000542541 WDR97A6NE52 1622 aa38.68■■■■□ 3.78
HOMER3-205ENST00000542541 ZNF608Q9ULD9 1512 aaPredicted RBP38.66■■■■□ 3.78
HOMER3-205ENST00000542541 TDRD9Q8NDG6 1382 aaKnown RBP38.62■■■■□ 3.77
HOMER3-205ENST00000542541 EIF4G3O43432 1585 aaKnown RBP38.57■■■■□ 3.76
HOMER3-205ENST00000542541 KIF27Q86VH2 1401 aa38.55■■■■□ 3.76
HOMER3-205ENST00000542541 AQRO60306 1485 aaKnown RBP eCLIP38.54■■■■□ 3.76
HOMER3-205ENST00000542541 GAPVD1Q14C86 1478 aa38.49■■■■□ 3.75
HOMER3-205ENST00000542541 ABCA5Q8WWZ7 1642 aa38.44■■■■□ 3.74
HOMER3-205ENST00000542541 GRIN2BQ13224 1484 aa38.38■■■■□ 3.73
HOMER3-205ENST00000542541 EEA1Q15075 1411 aa38.36■■■■□ 3.73
HOMER3-205ENST00000542541 RUSC2Q8N2Y8 1516 aa38.35■■■■□ 3.73
HOMER3-205ENST00000542541 PBRM1Q86U86 1689 aa38.3■■■■□ 3.72
HOMER3-205ENST00000542541 IGF1RP08069 1367 aa38.28■■■■□ 3.72
HOMER3-205ENST00000542541 ERICH3Q5RHP9 1530 aa38.28■■■■□ 3.72
HOMER3-205ENST00000542541 FAM9AQ8IZU1 332 aaPredicted RBP38.24■■■■□ 3.71
HOMER3-205ENST00000542541 CSRNP3Q8WYN3 585 aa38.22■■■■□ 3.71
HOMER3-205ENST00000542541 MAGI1Q96QZ7 1491 aaPredicted RBP38.18■■■■□ 3.7
HOMER3-205ENST00000542541 SNAPC4Q5SXM2 1469 aa38.17■■■■□ 3.7
HOMER3-205ENST00000542541 FHAD1B1AJZ9 1412 aa38.09■■■■□ 3.69
HOMER3-205ENST00000542541 CARMIL1Q5VZK9 1371 aa38.09■■■■□ 3.69
HOMER3-205ENST00000542541 CUL7Q14999 1698 aa38.06■■■■□ 3.68
HOMER3-205ENST00000542541 CHMP7Q8WUX9 453 aaPredicted RBP38.04■■■■□ 3.68
HOMER3-205ENST00000542541 CHD1O14646 1710 aa38.04■■■■□ 3.68
HOMER3-205ENST00000542541 SYNJ2O15056 1496 aa38.03■■■■□ 3.68
HOMER3-205ENST00000542541 ADAMTS12P58397 1594 aa38.02■■■■□ 3.68
HOMER3-205ENST00000542541 FBLN2P98095 1184 aa38.01■■■■□ 3.67
HOMER3-205ENST00000542541 PRXQ9BXM0 1461 aa37.96■■■■□ 3.67
HOMER3-205ENST00000542541 RAPGEF2Q9Y4G8 1499 aa37.93■■■■□ 3.66
HOMER3-205ENST00000542541 GRIN2AQ12879 1464 aa37.86■■■■□ 3.65
HOMER3-205ENST00000542541 KIF21BO75037 1637 aa37.8■■■■□ 3.64
HOMER3-205ENST00000542541 OSCARQ8IYS5 282 aa37.73■■■■□ 3.63
HOMER3-205ENST00000542541 GOLGA3Q08378 1498 aa37.7■■■■□ 3.63
HOMER3-205ENST00000542541 EHMT2Q96KQ7 1210 aa37.66■■■■□ 3.62
HOMER3-205ENST00000542541 NUP160Q12769 1436 aa37.66■■■■□ 3.62
HOMER3-205ENST00000542541 UBTFP17480 764 aaKnown RBP37.62■■■■□ 3.61
HOMER3-205ENST00000542541 CEP170Q5SW79 1584 aa37.61■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms