Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP3Q7Z494 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
NPHP3Q7Z494 IRS3P-201ENST00000223076 1006 ntBASIC32.02■■■□□ 2.72
NPHP3Q7Z494 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
NPHP3Q7Z494 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC32.01■■■□□ 2.72
NPHP3Q7Z494 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.01■■■□□ 2.71
NPHP3Q7Z494 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC32.01■■■□□ 2.71
NPHP3Q7Z494 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC32■■■□□ 2.71
NPHP3Q7Z494 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC32■■■□□ 2.71
NPHP3Q7Z494 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC32■■■□□ 2.71
NPHP3Q7Z494 AC011298.3-201ENST00000615796 283 ntBASIC32■■■□□ 2.71
NPHP3Q7Z494 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32■■■□□ 2.71
NPHP3Q7Z494 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC31.99■■■□□ 2.71
NPHP3Q7Z494 RARRES2P11-201ENST00000635158 484 ntBASIC31.99■■■□□ 2.71
NPHP3Q7Z494 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 AC139426.1-201ENST00000568218 2529 ntBASIC31.98■■■□□ 2.71
NPHP3Q7Z494 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 JTB-203ENST00000368589 1216 ntTSL 2 BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.98■■■□□ 2.71
NPHP3Q7Z494 AC090192.1-201ENST00000517740 490 ntBASIC31.98■■■□□ 2.71
NPHP3Q7Z494 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.98■■■□□ 2.71
NPHP3Q7Z494 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 AL138724.1-201ENST00000606771 1088 ntBASIC31.97■■■□□ 2.71
NPHP3Q7Z494 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NPHP3Q7Z494 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 RHOF-204ENST00000537265 699 ntTSL 2 BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.96■■■□□ 2.71
NPHP3Q7Z494 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
NPHP3Q7Z494 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.95■■■□□ 2.71
NPHP3Q7Z494 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.95■■■□□ 2.7
NPHP3Q7Z494 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
NPHP3Q7Z494 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.95■■■□□ 2.7
NPHP3Q7Z494 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
NPHP3Q7Z494 AC008764.7-201ENST00000593779 1081 ntBASIC31.95■■■□□ 2.7
NPHP3Q7Z494 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.94■■■□□ 2.7
NPHP3Q7Z494 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 AC099791.1-201ENST00000416440 715 ntBASIC31.93■■■□□ 2.7
NPHP3Q7Z494 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC31.93■■■□□ 2.7
NPHP3Q7Z494 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
NPHP3Q7Z494 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
NPHP3Q7Z494 AC099791.2-201ENST00000605725 427 ntBASIC31.91■■■□□ 2.7
NPHP3Q7Z494 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
NPHP3Q7Z494 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC31.89■■■□□ 2.7
NPHP3Q7Z494 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC31.88■■■□□ 2.69
NPHP3Q7Z494 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
NPHP3Q7Z494 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC31.88■■■□□ 2.69
NPHP3Q7Z494 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
NPHP3Q7Z494 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 SP2-202ENST00000613139 908 ntTSL 5 BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NPHP3Q7Z494 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms