Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC22.72■■□□□ 1.23
PCDHGA3Q9Y5H0 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PCDHGA3Q9Y5H0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.72■■□□□ 1.23
PCDHGA3Q9Y5H0 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PCDHGA3Q9Y5H0 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.7■■□□□ 1.22
PCDHGA3Q9Y5H0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA3Q9Y5H0 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PCDHGA3Q9Y5H0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
PCDHGA3Q9Y5H0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PCDHGA3Q9Y5H0 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
PCDHGA3Q9Y5H0 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 AP004609.3-201ENST00000610705 1884 ntBASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PCDHGA3Q9Y5H0 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 AC092028.1-203ENST00000608262 953 ntBASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 AC145676.1-201ENST00000514988 2004 ntBASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 AC093323.1-202ENST00000635031 2045 ntBASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
PCDHGA3Q9Y5H0 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.64■■□□□ 1.21
PCDHGA3Q9Y5H0 MIR4281-201ENST00000580852 62 ntBASIC22.64■■□□□ 1.21
PCDHGA3Q9Y5H0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PCDHGA3Q9Y5H0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.63■■□□□ 1.21
PCDHGA3Q9Y5H0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 TSPY9P-201ENST00000440215 945 ntBASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 TSPY11P-201ENST00000442607 1045 ntBASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
PCDHGA3Q9Y5H0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
PCDHGA3Q9Y5H0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.61■■□□□ 1.21
PCDHGA3Q9Y5H0 AC011551.1-201ENST00000614101 683 ntBASIC22.61■■□□□ 1.21
PCDHGA3Q9Y5H0 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.6■■□□□ 1.21
PCDHGA3Q9Y5H0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.59■■□□□ 1.21
PCDHGA3Q9Y5H0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms