Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
ABCA4P78363 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
ABCA4P78363 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA4P78363 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.32■□□□□ 0.84
ABCA4P78363 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
ABCA4P78363 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ABCA4P78363 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ABCA4P78363 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.31■□□□□ 0.84
ABCA4P78363 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.31■□□□□ 0.84
ABCA4P78363 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ABCA4P78363 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.3■□□□□ 0.84
ABCA4P78363 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA4P78363 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA4P78363 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA4P78363 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.3■□□□□ 0.84
ABCA4P78363 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ABCA4P78363 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA4P78363 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.29■□□□□ 0.84
ABCA4P78363 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.29■□□□□ 0.84
ABCA4P78363 AC104564.3-201ENST00000582367 638 ntBASIC20.29■□□□□ 0.84
ABCA4P78363 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.29■□□□□ 0.84
ABCA4P78363 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
ABCA4P78363 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
ABCA4P78363 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.28■□□□□ 0.84
ABCA4P78363 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA4P78363 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ABCA4P78363 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA4P78363 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.28■□□□□ 0.84
ABCA4P78363 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.28■□□□□ 0.84
ABCA4P78363 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA4P78363 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA4P78363 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.27■□□□□ 0.84
ABCA4P78363 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.27■□□□□ 0.84
ABCA4P78363 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ABCA4P78363 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.27■□□□□ 0.83
ABCA4P78363 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.27■□□□□ 0.83
ABCA4P78363 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
ABCA4P78363 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ABCA4P78363 MIR5787-201ENST00000611784 55 ntBASIC20.27■□□□□ 0.83
ABCA4P78363 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.27■□□□□ 0.83
ABCA4P78363 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
ABCA4P78363 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ABCA4P78363 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.26■□□□□ 0.83
ABCA4P78363 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ABCA4P78363 ERN1-208ENST00000606895 2068 ntBASIC20.26■□□□□ 0.83
ABCA4P78363 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ABCA4P78363 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.25■□□□□ 0.83
ABCA4P78363 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA4P78363 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.25■□□□□ 0.83
ABCA4P78363 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA4P78363 SNX5-217ENST00000606557 1087 ntBASIC20.25■□□□□ 0.83
ABCA4P78363 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA4P78363 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA4P78363 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ABCA4P78363 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.24■□□□□ 0.83
ABCA4P78363 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
ABCA4P78363 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.24■□□□□ 0.83
ABCA4P78363 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.24■□□□□ 0.83
ABCA4P78363 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.24■□□□□ 0.83
ABCA4P78363 AC106739.1-201ENST00000617035 715 ntBASIC20.24■□□□□ 0.83
ABCA4P78363 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA4P78363 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.24■□□□□ 0.83
ABCA4P78363 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.24■□□□□ 0.83
ABCA4P78363 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA4P78363 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.24■□□□□ 0.83
ABCA4P78363 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA4P78363 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ABCA4P78363 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
ABCA4P78363 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA4P78363 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.23■□□□□ 0.83
ABCA4P78363 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.23■□□□□ 0.83
ABCA4P78363 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.23■□□□□ 0.83
ABCA4P78363 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.23■□□□□ 0.83
ABCA4P78363 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ABCA4P78363 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.22■□□□□ 0.83
ABCA4P78363 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
ABCA4P78363 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
ABCA4P78363 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA4P78363 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
ABCA4P78363 AC142381.2-201ENST00000566120 298 ntBASIC20.22■□□□□ 0.83
ABCA4P78363 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
ABCA4P78363 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.21■□□□□ 0.83
ABCA4P78363 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ABCA4P78363 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.21■□□□□ 0.83
ABCA4P78363 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ABCA4P78363 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ABCA4P78363 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.21■□□□□ 0.83
ABCA4P78363 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ABCA4P78363 AC096887.2-201ENST00000623443 1957 ntBASIC20.2■□□□□ 0.82
ABCA4P78363 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms