Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RXRBP28702 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
RXRBP28702 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.63■■■□□ 2.65
RXRBP28702 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
RXRBP28702 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.63■■■□□ 2.65
RXRBP28702 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
RXRBP28702 VPS53-216ENST00000574029 585 ntTSL 4 BASIC31.63■■■□□ 2.65
RXRBP28702 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC31.63■■■□□ 2.65
RXRBP28702 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC31.63■■■□□ 2.65
RXRBP28702 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RXRBP28702 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC31.63■■■□□ 2.65
RXRBP28702 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
RXRBP28702 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RXRBP28702 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC31.61■■■□□ 2.65
RXRBP28702 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
RXRBP28702 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC31.61■■■□□ 2.65
RXRBP28702 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.61■■■□□ 2.65
RXRBP28702 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC31.61■■■□□ 2.65
RXRBP28702 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RXRBP28702 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RXRBP28702 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RXRBP28702 AC099791.1-201ENST00000416440 715 ntBASIC31.6■■■□□ 2.65
RXRBP28702 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
RXRBP28702 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC31.6■■■□□ 2.65
RXRBP28702 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
RXRBP28702 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RXRBP28702 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RXRBP28702 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC31.59■■■□□ 2.65
RXRBP28702 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RXRBP28702 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
RXRBP28702 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC31.58■■■□□ 2.65
RXRBP28702 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC31.58■■■□□ 2.65
RXRBP28702 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
RXRBP28702 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
RXRBP28702 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC31.57■■■□□ 2.64
RXRBP28702 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC31.57■■■□□ 2.64
RXRBP28702 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RXRBP28702 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC31.57■■■□□ 2.64
RXRBP28702 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RXRBP28702 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
RXRBP28702 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RXRBP28702 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RXRBP28702 AC092171.4-201ENST00000609130 632 ntBASIC31.56■■■□□ 2.64
RXRBP28702 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
RXRBP28702 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RXRBP28702 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RXRBP28702 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RXRBP28702 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RXRBP28702 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RXRBP28702 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.55■■■□□ 2.64
RXRBP28702 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.55■■■□□ 2.64
RXRBP28702 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.55■■■□□ 2.64
RXRBP28702 AL031602.1-201ENST00000633169 911 ntBASIC31.55■■■□□ 2.64
RXRBP28702 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC31.54■■■□□ 2.64
RXRBP28702 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC31.54■■■□□ 2.64
RXRBP28702 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC31.54■■■□□ 2.64
RXRBP28702 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC31.54■■■□□ 2.64
RXRBP28702 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.53■■■□□ 2.64
RXRBP28702 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
RXRBP28702 SERBP1P1-201ENST00000396021 1160 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L2-201ENST00000561772 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC31.53■■■□□ 2.64
RXRBP28702 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L6-201ENST00000626483 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L1-201ENST00000627662 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L8-201ENST00000629013 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L3-201ENST00000630187 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L7-201ENST00000630678 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 DUX4L5-201ENST00000630834 1275 ntBASIC31.53■■■□□ 2.64
RXRBP28702 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RXRBP28702 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC31.52■■■□□ 2.64
RXRBP28702 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC31.52■■■□□ 2.64
RXRBP28702 TMEM191A-211ENST00000637163 1067 ntBASIC31.52■■■□□ 2.64
RXRBP28702 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.52■■■□□ 2.64
RXRBP28702 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RXRBP28702 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
RXRBP28702 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
RXRBP28702 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RXRBP28702 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RXRBP28702 YBX1P1-201ENST00000445822 960 ntBASIC31.5■■■□□ 2.63
RXRBP28702 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RXRBP28702 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RXRBP28702 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.49■■■□□ 2.63
RXRBP28702 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC31.48■■■□□ 2.63
RXRBP28702 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RXRBP28702 ST7-AS1-201ENST00000456775 1889 ntBASIC31.48■■■□□ 2.63
RXRBP28702 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.48■■■□□ 2.63
RXRBP28702 SSSCA1-AS1-201ENST00000567594 614 ntBASIC31.47■■■□□ 2.63
RXRBP28702 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC31.47■■■□□ 2.63
RXRBP28702 AC066615.1-201ENST00000640911 628 ntBASIC31.47■■■□□ 2.63
RXRBP28702 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RXRBP28702 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RXRBP28702 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
RXRBP28702 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
RXRBP28702 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
RXRBP28702 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
RXRBP28702 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
RXRBP28702 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
RXRBP28702 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.45■■■□□ 2.63
RXRBP28702 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms