Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.6■■□□□ 1.21
LSM1O15116 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.6■■□□□ 1.21
LSM1O15116 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
LSM1O15116 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
LSM1O15116 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.6■■□□□ 1.21
LSM1O15116 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.59■■□□□ 1.21
LSM1O15116 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
LSM1O15116 HES4-202ENST00000428771 1040 ntTSL 2 BASIC22.59■■□□□ 1.21
LSM1O15116 AC026202.3-201ENST00000600805 1127 ntBASIC22.59■■□□□ 1.21
LSM1O15116 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
LSM1O15116 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
LSM1O15116 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
LSM1O15116 GPX1-201ENST00000419349 1106 ntBASIC22.58■■□□□ 1.21
LSM1O15116 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
LSM1O15116 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
LSM1O15116 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.2
LSM1O15116 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC22.58■■□□□ 1.2
LSM1O15116 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
LSM1O15116 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.57■■□□□ 1.2
LSM1O15116 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
LSM1O15116 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LSM1O15116 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC22.56■■□□□ 1.2
LSM1O15116 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LSM1O15116 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LSM1O15116 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
LSM1O15116 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.55■■□□□ 1.2
LSM1O15116 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LSM1O15116 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LSM1O15116 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LSM1O15116 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
LSM1O15116 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
LSM1O15116 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC22.55■■□□□ 1.2
LSM1O15116 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.54■■□□□ 1.2
LSM1O15116 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
LSM1O15116 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC22.54■■□□□ 1.2
LSM1O15116 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.54■■□□□ 1.2
LSM1O15116 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.54■■□□□ 1.2
LSM1O15116 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC22.54■■□□□ 1.2
LSM1O15116 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
LSM1O15116 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
LSM1O15116 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LSM1O15116 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LSM1O15116 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
LSM1O15116 AC004812.2-201ENST00000611079 2094 ntBASIC22.53■■□□□ 1.2
LSM1O15116 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 KRT18P10-201ENST00000388836 1287 ntBASIC22.52■■□□□ 1.2
LSM1O15116 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.52■■□□□ 1.2
LSM1O15116 FOXO3B-201ENST00000395675 1928 ntBASIC22.52■■□□□ 1.2
LSM1O15116 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LSM1O15116 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.19
LSM1O15116 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.52■■□□□ 1.19
LSM1O15116 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LSM1O15116 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LSM1O15116 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LSM1O15116 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
LSM1O15116 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
LSM1O15116 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LSM1O15116 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 HLA-L-211ENST00000482052 1765 ntBASIC22.49■■□□□ 1.19
LSM1O15116 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
LSM1O15116 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC22.49■■□□□ 1.19
LSM1O15116 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.49■■□□□ 1.19
LSM1O15116 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
LSM1O15116 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LSM1O15116 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
LSM1O15116 AC009831.1-201ENST00000580420 1582 ntBASIC22.48■■□□□ 1.19
LSM1O15116 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LSM1O15116 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LSM1O15116 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LSM1O15116 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.48■■□□□ 1.19
LSM1O15116 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
LSM1O15116 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms