RNA–Protein interactions for RNA: ENST00000248958.4

SDF2L1-201, Transcript of stromal cell derived factor 2 like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2L1, Length 865 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2L1-201ENST00000248958 NISCHQ9Y2I1 1504 aa59.23■■■■■ 7.07
SDF2L1-201ENST00000248958 CCDC180Q9P1Z9 1646 aa52.78■■■■■ 6.04
SDF2L1-201ENST00000248958 ABCC9O60706 1549 aa51.57■■■■■ 5.85
SDF2L1-201ENST00000248958 RB1CC1Q8TDY2 1594 aa49.69■■■■■ 5.54
SDF2L1-201ENST00000248958 NACADO15069 1562 aa49.62■■■■■ 5.53
SDF2L1-201ENST00000248958 DCAF8L2P0C7V8 631 aa49.44■■■■■ 5.51
SDF2L1-201ENST00000248958 MYO15BQ96JP2 1530 aa49.34■■■■■ 5.49
SDF2L1-201ENST00000248958 ZCCHC6Q5VYS8 1495 aaKnown RBP49.32■■■■■ 5.49
SDF2L1-201ENST00000248958 DCAF1Q9Y4B6 1507 aa49.08■■■■■ 5.45
SDF2L1-201ENST00000248958 UNC13AQ9UPW8 1703 aa48.54■■■■■ 5.36
SDF2L1-201ENST00000248958 PABPN1Q86U42 306 aaKnown RBP eCLIP48.13■■■■■ 5.3
SDF2L1-201ENST00000248958 BICRAQ9NZM4 1560 aa48.1■■■■■ 5.29
SDF2L1-201ENST00000248958 SCRIBQ14160 1630 aa48.03■■■■■ 5.28
SDF2L1-201ENST00000248958 SHROOM4Q9ULL8 1493 aa47.73■■■■■ 5.23
SDF2L1-201ENST00000248958 DNAJC5BQ9UF47 199 aa47.68■■■■■ 5.22
SDF2L1-201ENST00000248958 EIF4G1Q04637 1599 aaKnown RBP46.87■■■■■ 5.09
SDF2L1-201ENST00000248958 CC2D2AQ9P2K1 1620 aa46.7■■■■■ 5.07
SDF2L1-201ENST00000248958 CECR2Q9BXF3 1484 aa46.38■■■■■ 5.02
SDF2L1-201ENST00000248958 SMARCA4P51532 1647 aa45.99■■■■■ 4.95
SDF2L1-201ENST00000248958 BAZ1AQ9NRL2 1556 aaPredicted RBP45.96■■■■■ 4.95
SDF2L1-201ENST00000248958 NCAPD3P42695 1498 aa45.75■■■■■ 4.91
SDF2L1-201ENST00000248958 SMARCA2P51531 1590 aa45.74■■■■■ 4.91
SDF2L1-201ENST00000248958 ATAD2BQ9ULI0 1458 aa45.74■■■■■ 4.91
SDF2L1-201ENST00000248958 MROH2BQ7Z745 1585 aa45.59■■■■■ 4.89
SDF2L1-201ENST00000248958 PEG3Q9GZU2 1588 aa45.58■■■■■ 4.89
SDF2L1-201ENST00000248958 HMGXB3Q12766 1538 aa45.54■■■■■ 4.88
SDF2L1-201ENST00000248958 BAZ1BQ9UIG0 1483 aaKnown RBP45.37■■■■■ 4.85
SDF2L1-201ENST00000248958 WIZO95785 1651 aa45.12■■■■■ 4.81
SDF2L1-201ENST00000248958 RSF1Q96T23 1441 aaPredicted RBP45.05■■■■■ 4.8
SDF2L1-201ENST00000248958 TOP2AP11388 1531 aaKnown RBP44.68■■■■■ 4.74
SDF2L1-201ENST00000248958 LAMC3Q9Y6N6 1575 aa44.6■■■■■ 4.73
SDF2L1-201ENST00000248958 NESP48681 1621 aa44.57■■■■■ 4.73
SDF2L1-201ENST00000248958 ERCC6Q03468 1493 aa44.51■■■■■ 4.72
SDF2L1-201ENST00000248958 CADPSQ9ULU8 1353 aa44.4■■■■■ 4.7
SDF2L1-201ENST00000248958 PDS5BQ9NTI5 1447 aa44.28■■■■■ 4.68
SDF2L1-201ENST00000248958 KIF21AQ7Z4S6 1674 aa44.13■■■■■ 4.65
SDF2L1-201ENST00000248958 CCDC88BA6NC98 1476 aa44.12■■■■■ 4.65
SDF2L1-201ENST00000248958 CUX2O14529 1486 aa44.12■■■■■ 4.65
SDF2L1-201ENST00000248958 CFTRP13569 1480 aa44.12■■■■■ 4.65
SDF2L1-201ENST00000248958 THOC2Q8NI27 1593 aaKnown RBP44■■■■■ 4.63
SDF2L1-201ENST00000248958 PRDM2Q13029 1718 aa43.88■■■■■ 4.62
SDF2L1-201ENST00000248958 FANCD2Q9BXW9 1451 aa43.88■■■■■ 4.61
SDF2L1-201ENST00000248958 CEP164Q9UPV0 1460 aa43.85■■■■■ 4.61
SDF2L1-201ENST00000248958 DNAJC5Q9H3Z4 198 aa43.82■■■■■ 4.61
SDF2L1-201ENST00000248958 SUPT5HO00267 1087 aaKnown RBP43.81■■■■■ 4.6
SDF2L1-201ENST00000248958 MRC2Q9UBG0 1479 aa43.8■■■■■ 4.6
SDF2L1-201ENST00000248958 WDR62O43379 1518 aa43.67■■■■■ 4.58
SDF2L1-201ENST00000248958 URB2Q14146 1524 aaKnown RBP43.41■■■■■ 4.54
SDF2L1-201ENST00000248958 ABCC8Q09428 1581 aa43.27■■■■■ 4.52
SDF2L1-201ENST00000248958 TOPBP1Q92547 1522 aa43.17■■■■■ 4.5
SDF2L1-201ENST00000248958 DNMBPQ6XZF7 1577 aa43.15■■■■■ 4.5
SDF2L1-201ENST00000248958 IFT140Q96RY7 1462 aa42.95■■■■■ 4.47
SDF2L1-201ENST00000248958 POLA1P09884 1462 aaPredicted RBP42.79■■■■■ 4.44
SDF2L1-201ENST00000248958 CUX1P39880 1505 aa42.78■■■■■ 4.44
SDF2L1-201ENST00000248958 TARBP1Q13395 1621 aaKnown RBP42.71■■■■■ 4.43
SDF2L1-201ENST00000248958 ZNF608Q9ULD9 1512 aaPredicted RBP42.67■■■■■ 4.42
SDF2L1-201ENST00000248958 FGD5Q6ZNL6 1462 aa42.67■■■■■ 4.42
SDF2L1-201ENST00000248958 SOGA1O94964 1423 aa42.63■■■■■ 4.42
SDF2L1-201ENST00000248958 EIF4G3O43432 1585 aaKnown RBP42.56■■■■■ 4.4
SDF2L1-201ENST00000248958 RAD54L2Q9Y4B4 1467 aa42.56■■■■■ 4.4
SDF2L1-201ENST00000248958 WRNQ14191 1432 aaPredicted RBP eCLIP42.52■■■■■ 4.4
SDF2L1-201ENST00000248958 WDR97A6NE52 1622 aa42.49■■■■■ 4.39
SDF2L1-201ENST00000248958 BIVM-ERCC5R4GMW8 1640 aa42.48■■■■■ 4.39
SDF2L1-201ENST00000248958 TOP2BQ02880 1626 aa42.46■■■■■ 4.39
SDF2L1-201ENST00000248958 AQRO60306 1485 aaKnown RBP eCLIP42.43■■■■■ 4.382e-13■■■■■ 39.1
SDF2L1-201ENST00000248958 SYNJ1O43426 1573 aa42.38■■■■■ 4.37
SDF2L1-201ENST00000248958 TDRD9Q8NDG6 1382 aaKnown RBP42.34■■■■■ 4.37
SDF2L1-201ENST00000248958 ABCA10Q8WWZ4 1543 aa42.3■■■■■ 4.36
SDF2L1-201ENST00000248958 OSCARQ8IYS5 282 aa42.24■■■■■ 4.35
SDF2L1-201ENST00000248958 GRIN2BQ13224 1484 aa42.16■■■■■ 4.34
SDF2L1-201ENST00000248958 GAPVD1Q14C86 1478 aa42.14■■■■■ 4.34
SDF2L1-201ENST00000248958 ABCA5Q8WWZ7 1642 aa42.13■■■■■ 4.34
SDF2L1-201ENST00000248958 PBRM1Q86U86 1689 aa42.09■■■■■ 4.33
SDF2L1-201ENST00000248958 MAGI1Q96QZ7 1491 aaPredicted RBP42.08■■■■■ 4.33
SDF2L1-201ENST00000248958 SNAPC4Q5SXM2 1469 aa42.07■■■■■ 4.33
SDF2L1-201ENST00000248958 CHD1O14646 1710 aa42.06■■■■■ 4.32
SDF2L1-201ENST00000248958 FBLN2P98095 1184 aa41.95■■■■■ 4.31
SDF2L1-201ENST00000248958 SYNJ2O15056 1496 aa41.89■■■■■ 4.3
SDF2L1-201ENST00000248958 CHMP7Q8WUX9 453 aaPredicted RBP41.87■■■■■ 4.29
SDF2L1-201ENST00000248958 TRIM41Q8WV44 630 aa41.85■■■■■ 4.29
SDF2L1-201ENST00000248958 ERICH3Q5RHP9 1530 aa41.81■■■■■ 4.28
SDF2L1-201ENST00000248958 ADAMTS12P58397 1594 aa41.72■■■■■ 4.27
SDF2L1-201ENST00000248958 FHAD1B1AJZ9 1412 aa41.67■■■■■ 4.26
SDF2L1-201ENST00000248958 KIF27Q86VH2 1401 aa41.67■■■■■ 4.26
SDF2L1-201ENST00000248958 GRIN2AQ12879 1464 aa41.6■■■■■ 4.25
SDF2L1-201ENST00000248958 CLASP1Q7Z460 1538 aa41.59■■■■■ 4.25
SDF2L1-201ENST00000248958 RIMBP3CA6NJZ7 1639 aa41.55■■■■■ 4.24
SDF2L1-201ENST00000248958 RIMBP3BA6NNM3 1639 aa41.55■■■■■ 4.24
SDF2L1-201ENST00000248958 RIMBP3Q9UFD9 1639 aa41.55■■■■■ 4.24
SDF2L1-201ENST00000248958 ARHGEF11O15085 1522 aa41.54■■■■■ 4.24
SDF2L1-201ENST00000248958 IGF1RP08069 1367 aa41.46■■■■■ 4.23
SDF2L1-201ENST00000248958 CUL7Q14999 1698 aa41.44■■■■■ 4.22
SDF2L1-201ENST00000248958 NUP160Q12769 1436 aa41.42■■■■■ 4.22
SDF2L1-201ENST00000248958 CEP170Q5SW79 1584 aa41.37■■■■■ 4.21
SDF2L1-201ENST00000248958 CARMIL1Q5VZK9 1371 aa41.23■■■■■ 4.19
SDF2L1-201ENST00000248958 ARAP1Q96P48 1450 aa41.16■■■■■ 4.18
SDF2L1-201ENST00000248958 RUSC2Q8N2Y8 1516 aa41.15■■■■■ 4.18
SDF2L1-201ENST00000248958 SHROOM2Q13796 1616 aa41.15■■■■■ 4.18
SDF2L1-201ENST00000248958 CYB5RLQ6IPT4 315 aa41.12■■■■■ 4.17
SDF2L1-201ENST00000248958 KIAA0586Q9BVV6 1533 aa41.03■■■■■ 4.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms