Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.69■■■□□ 2.34
CFAP54Q96N23 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
CFAP54Q96N23 AC097358.2-201ENST00000607541 1159 ntBASIC29.62■■■□□ 2.33
CFAP54Q96N23 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.58■■■□□ 2.33
CFAP54Q96N23 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CFAP54Q96N23 AL031258.1-201ENST00000623562 325 ntBASIC29.55■■■□□ 2.32
CFAP54Q96N23 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
CFAP54Q96N23 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CFAP54Q96N23 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.3
CFAP54Q96N23 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
CFAP54Q96N23 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CFAP54Q96N23 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.44■■■□□ 2.3
CFAP54Q96N23 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.4■■■□□ 2.3
CFAP54Q96N23 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.4■■■□□ 2.3
CFAP54Q96N23 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CFAP54Q96N23 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CFAP54Q96N23 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CFAP54Q96N23 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CFAP54Q96N23 AL162393.1-201ENST00000437852 946 ntBASIC29.34■■■□□ 2.29
CFAP54Q96N23 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.34■■■□□ 2.29
CFAP54Q96N23 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.34■■■□□ 2.29
CFAP54Q96N23 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
CFAP54Q96N23 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
CFAP54Q96N23 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.31■■■□□ 2.28
CFAP54Q96N23 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.3■■■□□ 2.28
CFAP54Q96N23 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.24■■■□□ 2.27
CFAP54Q96N23 SETD8P1-201ENST00000623146 1180 ntBASIC29.24■■■□□ 2.27
CFAP54Q96N23 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CFAP54Q96N23 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CFAP54Q96N23 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.22■■■□□ 2.27
CFAP54Q96N23 HLA-V-202ENST00000446817 847 ntBASIC29.21■■■□□ 2.27
CFAP54Q96N23 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
CFAP54Q96N23 MIR7108-201ENST00000614319 87 ntBASIC29.18■■■□□ 2.26
CFAP54Q96N23 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CFAP54Q96N23 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CFAP54Q96N23 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.13■■■□□ 2.25
CFAP54Q96N23 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.11■■■□□ 2.25
CFAP54Q96N23 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.1■■■□□ 2.25
CFAP54Q96N23 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CFAP54Q96N23 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.07■■■□□ 2.24
CFAP54Q96N23 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
CFAP54Q96N23 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
CFAP54Q96N23 ABHD17AP4-201ENST00000411545 909 ntBASIC29.04■■■□□ 2.24
CFAP54Q96N23 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.02■■■□□ 2.24
CFAP54Q96N23 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CFAP54Q96N23 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.98■■■□□ 2.23
CFAP54Q96N23 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
CFAP54Q96N23 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
CFAP54Q96N23 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.95■■■□□ 2.22
CFAP54Q96N23 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
CFAP54Q96N23 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.9■■■□□ 2.22
CFAP54Q96N23 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.88■■■□□ 2.21
CFAP54Q96N23 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CFAP54Q96N23 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CFAP54Q96N23 AP006261.1-201ENST00000584783 668 ntBASIC28.84■■■□□ 2.21
CFAP54Q96N23 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.83■■■□□ 2.21
CFAP54Q96N23 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CFAP54Q96N23 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.83■■■□□ 2.21
CFAP54Q96N23 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.79■■■□□ 2.2
CFAP54Q96N23 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.79■■■□□ 2.2
CFAP54Q96N23 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
CFAP54Q96N23 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
CFAP54Q96N23 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.75■■■□□ 2.19
CFAP54Q96N23 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC28.73■■■□□ 2.19
CFAP54Q96N23 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.71■■■□□ 2.19
CFAP54Q96N23 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
CFAP54Q96N23 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
CFAP54Q96N23 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC28.68■■■□□ 2.18
CFAP54Q96N23 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.68■■■□□ 2.18
CFAP54Q96N23 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.67■■■□□ 2.18
CFAP54Q96N23 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.66■■■□□ 2.18
CFAP54Q96N23 CAHM-201ENST00000604200 896 ntBASIC28.66■■■□□ 2.18
CFAP54Q96N23 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.66■■■□□ 2.18
CFAP54Q96N23 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
CFAP54Q96N23 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CFAP54Q96N23 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CFAP54Q96N23 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.63■■■□□ 2.17
CFAP54Q96N23 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.63■■■□□ 2.17
CFAP54Q96N23 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC28.61■■■□□ 2.17
CFAP54Q96N23 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CFAP54Q96N23 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CFAP54Q96N23 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CFAP54Q96N23 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.57■■■□□ 2.16
CFAP54Q96N23 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CFAP54Q96N23 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CFAP54Q96N23 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.55■■■□□ 2.16
CFAP54Q96N23 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
CFAP54Q96N23 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
CFAP54Q96N23 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.52■■■□□ 2.16
CFAP54Q96N23 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
CFAP54Q96N23 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
CFAP54Q96N23 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
CFAP54Q96N23 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.5■■■□□ 2.15
CFAP54Q96N23 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.5■■■□□ 2.15
CFAP54Q96N23 AL391121.1-201ENST00000607967 1349 ntBASIC28.49■■■□□ 2.15
CFAP54Q96N23 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.49■■■□□ 2.15
CFAP54Q96N23 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
CFAP54Q96N23 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.46■■■□□ 2.15
CFAP54Q96N23 AC087741.3-201ENST00000624270 1347 ntBASIC28.44■■■□□ 2.14
CFAP54Q96N23 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.44■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms