Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC31.36■■■□□ 2.61
DDX53Q86TM3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
DDX53Q86TM3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.27■■■□□ 2.6
DDX53Q86TM3 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
DDX53Q86TM3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.25■■■□□ 2.59
DDX53Q86TM3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC31.22■■■□□ 2.59
DDX53Q86TM3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC31.22■■■□□ 2.59
DDX53Q86TM3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
DDX53Q86TM3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
DDX53Q86TM3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
DDX53Q86TM3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
DDX53Q86TM3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.14■■■□□ 2.58
DDX53Q86TM3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
DDX53Q86TM3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.11■■■□□ 2.57
DDX53Q86TM3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC31.11■■■□□ 2.57
DDX53Q86TM3 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
DDX53Q86TM3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
DDX53Q86TM3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
DDX53Q86TM3 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
DDX53Q86TM3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
DDX53Q86TM3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.98■■■□□ 2.55
DDX53Q86TM3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
DDX53Q86TM3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.98■■■□□ 2.55
DDX53Q86TM3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.93■■■□□ 2.54
DDX53Q86TM3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.93■■■□□ 2.54
DDX53Q86TM3 RARRES2P7-201ENST00000567349 469 ntBASIC30.93■■■□□ 2.54
DDX53Q86TM3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.92■■■□□ 2.54
DDX53Q86TM3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
DDX53Q86TM3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
DDX53Q86TM3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
DDX53Q86TM3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.88■■■□□ 2.53
DDX53Q86TM3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.88■■■□□ 2.53
DDX53Q86TM3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.87■■■□□ 2.53
DDX53Q86TM3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.83■■■□□ 2.53
DDX53Q86TM3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.83■■■□□ 2.53
DDX53Q86TM3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
DDX53Q86TM3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
DDX53Q86TM3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.79■■■□□ 2.52
DDX53Q86TM3 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.79■■■□□ 2.52
DDX53Q86TM3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.74■■■□□ 2.51
DDX53Q86TM3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.72■■■□□ 2.51
DDX53Q86TM3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
DDX53Q86TM3 AC097358.2-201ENST00000607541 1159 ntBASIC30.68■■■□□ 2.5
DDX53Q86TM3 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
DDX53Q86TM3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.67■■■□□ 2.5
DDX53Q86TM3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.67■■■□□ 2.5
DDX53Q86TM3 SETD8P1-201ENST00000623146 1180 ntBASIC30.65■■■□□ 2.5
DDX53Q86TM3 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
DDX53Q86TM3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.61■■■□□ 2.49
DDX53Q86TM3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
DDX53Q86TM3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.6■■■□□ 2.49
DDX53Q86TM3 AC136428.2-201ENST00000563187 214 ntBASIC30.6■■■□□ 2.49
DDX53Q86TM3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
DDX53Q86TM3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.57■■■□□ 2.48
DDX53Q86TM3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.57■■■□□ 2.48
DDX53Q86TM3 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
DDX53Q86TM3 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.53■■■□□ 2.48
DDX53Q86TM3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
DDX53Q86TM3 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.49■■■□□ 2.47
DDX53Q86TM3 AC145285.7-201ENST00000614819 1539 ntBASIC30.45■■■□□ 2.47
DDX53Q86TM3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
DDX53Q86TM3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.43■■■□□ 2.46
DDX53Q86TM3 SUZ12P1-203ENST00000578195 985 ntBASIC30.43■■■□□ 2.46
DDX53Q86TM3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.42■■■□□ 2.46
DDX53Q86TM3 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
DDX53Q86TM3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
DDX53Q86TM3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.4■■■□□ 2.46
DDX53Q86TM3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.39■■■□□ 2.46
DDX53Q86TM3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
DDX53Q86TM3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.37■■■□□ 2.45
DDX53Q86TM3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
DDX53Q86TM3 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
DDX53Q86TM3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
DDX53Q86TM3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.31■■■□□ 2.44
DDX53Q86TM3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.29■■■□□ 2.44
DDX53Q86TM3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
DDX53Q86TM3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
DDX53Q86TM3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
DDX53Q86TM3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
DDX53Q86TM3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
DDX53Q86TM3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
DDX53Q86TM3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.25■■■□□ 2.43
DDX53Q86TM3 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
DDX53Q86TM3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
DDX53Q86TM3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
DDX53Q86TM3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
DDX53Q86TM3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
DDX53Q86TM3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.2■■■□□ 2.43
DDX53Q86TM3 RPS2P35-201ENST00000443417 897 ntBASIC30.17■■■□□ 2.42
DDX53Q86TM3 CAHM-201ENST00000604200 896 ntBASIC30.17■■■□□ 2.42
DDX53Q86TM3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
DDX53Q86TM3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC30.15■■■□□ 2.42
DDX53Q86TM3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.12■■■□□ 2.41
DDX53Q86TM3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
DDX53Q86TM3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
DDX53Q86TM3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
DDX53Q86TM3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
DDX53Q86TM3 AL133380.1-201ENST00000506013 324 ntBASIC30.05■■■□□ 2.4
DDX53Q86TM3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
DDX53Q86TM3 AL391121.1-201ENST00000607967 1349 ntBASIC30.03■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms