Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.1■■■□□ 2.73
COL6A3P12111 AL031258.1-201ENST00000623562 325 ntBASIC32.07■■■□□ 2.73
COL6A3P12111 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL6A3P12111 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.02■■■□□ 2.72
COL6A3P12111 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL6A3P12111 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32■■■□□ 2.71
COL6A3P12111 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.98■■■□□ 2.71
COL6A3P12111 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL6A3P12111 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
COL6A3P12111 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.94■■■□□ 2.7
COL6A3P12111 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL6A3P12111 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL6A3P12111 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.87■■■□□ 2.69
COL6A3P12111 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
COL6A3P12111 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.86■■■□□ 2.69
COL6A3P12111 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.86■■■□□ 2.69
COL6A3P12111 AL162393.1-201ENST00000437852 946 ntBASIC31.86■■■□□ 2.69
COL6A3P12111 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.86■■■□□ 2.69
COL6A3P12111 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL6A3P12111 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
COL6A3P12111 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.8■■■□□ 2.68
COL6A3P12111 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL6A3P12111 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL6A3P12111 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.76■■■□□ 2.67
COL6A3P12111 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
COL6A3P12111 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.74■■■□□ 2.67
COL6A3P12111 MIR7108-201ENST00000614319 87 ntBASIC31.7■■■□□ 2.67
COL6A3P12111 SETD8P1-201ENST00000623146 1180 ntBASIC31.7■■■□□ 2.67
COL6A3P12111 HLA-V-202ENST00000446817 847 ntBASIC31.69■■■□□ 2.66
COL6A3P12111 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.69■■■□□ 2.66
COL6A3P12111 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL6A3P12111 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.64■■■□□ 2.65
COL6A3P12111 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
COL6A3P12111 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
COL6A3P12111 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
COL6A3P12111 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.59■■■□□ 2.65
COL6A3P12111 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
COL6A3P12111 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.54■■■□□ 2.64
COL6A3P12111 ABHD17AP4-201ENST00000411545 909 ntBASIC31.53■■■□□ 2.64
COL6A3P12111 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.53■■■□□ 2.64
COL6A3P12111 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
COL6A3P12111 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL6A3P12111 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.5■■■□□ 2.63
COL6A3P12111 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
COL6A3P12111 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
COL6A3P12111 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.41■■■□□ 2.62
COL6A3P12111 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL6A3P12111 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
COL6A3P12111 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
COL6A3P12111 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC31.35■■■□□ 2.61
COL6A3P12111 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
COL6A3P12111 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.29■■■□□ 2.6
COL6A3P12111 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.27■■■□□ 2.6
COL6A3P12111 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL6A3P12111 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC31.25■■■□□ 2.59
COL6A3P12111 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
COL6A3P12111 AP006261.1-201ENST00000584783 668 ntBASIC31.24■■■□□ 2.59
COL6A3P12111 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
COL6A3P12111 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.22■■■□□ 2.59
COL6A3P12111 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL6A3P12111 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.15■■■□□ 2.58
COL6A3P12111 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
COL6A3P12111 EBPL-203ENST00000378270 579 ntTSL 2 BASIC31.14■■■□□ 2.58
COL6A3P12111 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.14■■■□□ 2.58
COL6A3P12111 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.58
COL6A3P12111 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
COL6A3P12111 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.13■■■□□ 2.57
COL6A3P12111 CAHM-201ENST00000604200 896 ntBASIC31.09■■■□□ 2.57
COL6A3P12111 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL6A3P12111 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.08■■■□□ 2.57
COL6A3P12111 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.07■■■□□ 2.56
COL6A3P12111 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
COL6A3P12111 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.06■■■□□ 2.56
COL6A3P12111 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.06■■■□□ 2.56
COL6A3P12111 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL6A3P12111 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.05■■■□□ 2.56
COL6A3P12111 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
COL6A3P12111 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC31.04■■■□□ 2.56
COL6A3P12111 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
COL6A3P12111 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL6A3P12111 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.01■■■□□ 2.55
COL6A3P12111 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.01■■■□□ 2.55
COL6A3P12111 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL6A3P12111 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.97■■■□□ 2.55
COL6A3P12111 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL6A3P12111 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.96■■■□□ 2.55
COL6A3P12111 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.96■■■□□ 2.55
COL6A3P12111 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL6A3P12111 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.91■■■□□ 2.54
COL6A3P12111 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.9■■■□□ 2.54
COL6A3P12111 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.9■■■□□ 2.54
COL6A3P12111 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL6A3P12111 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
COL6A3P12111 MIR4449-201ENST00000578365 66 ntBASIC30.87■■■□□ 2.53
COL6A3P12111 AL391121.1-201ENST00000607967 1349 ntBASIC30.86■■■□□ 2.53
COL6A3P12111 AC087741.3-201ENST00000624270 1347 ntBASIC30.86■■■□□ 2.53
COL6A3P12111 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL6A3P12111 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.84■■■□□ 2.53
COL6A3P12111 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL6A3P12111 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms