Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC39.46■■■■□ 3.91
CSB-PGBD3P0DP91 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
CSB-PGBD3P0DP91 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC39.41■■■■□ 3.9
CSB-PGBD3P0DP91 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC39.4■■■■□ 3.9
CSB-PGBD3P0DP91 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC39.4■■■■□ 3.9
CSB-PGBD3P0DP91 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC39.4■■■■□ 3.9
CSB-PGBD3P0DP91 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC39.37■■■■□ 3.89
CSB-PGBD3P0DP91 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC39.37■■■■□ 3.89
CSB-PGBD3P0DP91 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
CSB-PGBD3P0DP91 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC39.35■■■■□ 3.89
CSB-PGBD3P0DP91 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC39.33■■■■□ 3.89
CSB-PGBD3P0DP91 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC39.31■■■■□ 3.88
CSB-PGBD3P0DP91 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC39.28■■■■□ 3.88
CSB-PGBD3P0DP91 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC39.27■■■■□ 3.88
CSB-PGBD3P0DP91 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC39.25■■■■□ 3.87
CSB-PGBD3P0DP91 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC39.25■■■■□ 3.87
CSB-PGBD3P0DP91 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC39.24■■■■□ 3.87
CSB-PGBD3P0DP91 RARRES2P7-201ENST00000567349 469 ntBASIC39.19■■■■□ 3.86
CSB-PGBD3P0DP91 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC39.15■■■■□ 3.86
CSB-PGBD3P0DP91 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
CSB-PGBD3P0DP91 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC39.1■■■■□ 3.85
CSB-PGBD3P0DP91 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC39.09■■■■□ 3.85
CSB-PGBD3P0DP91 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC39.08■■■■□ 3.85
CSB-PGBD3P0DP91 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC39■■■■□ 3.83
CSB-PGBD3P0DP91 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC38.98■■■■□ 3.83
CSB-PGBD3P0DP91 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC38.94■■■■□ 3.82
CSB-PGBD3P0DP91 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
CSB-PGBD3P0DP91 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC38.91■■■■□ 3.82
CSB-PGBD3P0DP91 AC097358.2-201ENST00000607541 1159 ntBASIC38.89■■■■□ 3.82
CSB-PGBD3P0DP91 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC38.87■■■■□ 3.81
CSB-PGBD3P0DP91 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC38.86■■■■□ 3.81
CSB-PGBD3P0DP91 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC38.85■■■■□ 3.81
CSB-PGBD3P0DP91 EBPL-203ENST00000378270 579 ntTSL 2 BASIC38.82■■■■□ 3.8
CSB-PGBD3P0DP91 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
CSB-PGBD3P0DP91 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC38.8■■■■□ 3.8
CSB-PGBD3P0DP91 SETD8P1-201ENST00000623146 1180 ntBASIC38.78■■■■□ 3.8
CSB-PGBD3P0DP91 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
CSB-PGBD3P0DP91 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
CSB-PGBD3P0DP91 AC136428.2-201ENST00000563187 214 ntBASIC38.73■■■■□ 3.79
CSB-PGBD3P0DP91 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC38.72■■■■□ 3.79
CSB-PGBD3P0DP91 KLF16-203ENST00000592313 508 ntTSL 3 BASIC38.69■■■■□ 3.78
CSB-PGBD3P0DP91 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC38.67■■■■□ 3.78
CSB-PGBD3P0DP91 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC38.66■■■■□ 3.78
CSB-PGBD3P0DP91 ILK-212ENST00000532063 1617 ntTSL 2 BASIC38.66■■■■□ 3.78
CSB-PGBD3P0DP91 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC38.6■■■■□ 3.77
CSB-PGBD3P0DP91 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
CSB-PGBD3P0DP91 SUZ12P1-203ENST00000578195 985 ntBASIC38.57■■■■□ 3.76
CSB-PGBD3P0DP91 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC38.56■■■■□ 3.76
CSB-PGBD3P0DP91 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC38.56■■■■□ 3.76
CSB-PGBD3P0DP91 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
CSB-PGBD3P0DP91 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC38.53■■■■□ 3.76
CSB-PGBD3P0DP91 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC38.51■■■■□ 3.76
CSB-PGBD3P0DP91 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC38.5■■■■□ 3.75
CSB-PGBD3P0DP91 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC38.49■■■■□ 3.75
CSB-PGBD3P0DP91 RPS2P35-201ENST00000443417 897 ntBASIC38.48■■■■□ 3.75
CSB-PGBD3P0DP91 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC38.46■■■■□ 3.75
CSB-PGBD3P0DP91 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC38.42■■■■□ 3.74
CSB-PGBD3P0DP91 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC38.41■■■■□ 3.74
CSB-PGBD3P0DP91 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC38.39■■■■□ 3.74
CSB-PGBD3P0DP91 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
CSB-PGBD3P0DP91 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC38.38■■■■□ 3.73
CSB-PGBD3P0DP91 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC38.38■■■■□ 3.73
CSB-PGBD3P0DP91 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC38.37■■■■□ 3.73
CSB-PGBD3P0DP91 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC38.36■■■■□ 3.73
CSB-PGBD3P0DP91 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC38.35■■■■□ 3.73
CSB-PGBD3P0DP91 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
CSB-PGBD3P0DP91 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC38.34■■■■□ 3.73
CSB-PGBD3P0DP91 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC38.31■■■■□ 3.72
CSB-PGBD3P0DP91 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC38.31■■■■□ 3.72
CSB-PGBD3P0DP91 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.71
CSB-PGBD3P0DP91 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC38.23■■■■□ 3.71
CSB-PGBD3P0DP91 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC38.2■■■■□ 3.71
CSB-PGBD3P0DP91 MVK-208ENST00000539696 608 ntTSL 5 BASIC38.19■■■■□ 3.7
CSB-PGBD3P0DP91 AC145285.7-201ENST00000614819 1539 ntBASIC38.17■■■■□ 3.7
CSB-PGBD3P0DP91 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC38.13■■■■□ 3.7
CSB-PGBD3P0DP91 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
CSB-PGBD3P0DP91 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC38.11■■■■□ 3.69
CSB-PGBD3P0DP91 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
CSB-PGBD3P0DP91 CAHM-201ENST00000604200 896 ntBASIC38.08■■■■□ 3.69
CSB-PGBD3P0DP91 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.69
CSB-PGBD3P0DP91 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC38.04■■■■□ 3.68
CSB-PGBD3P0DP91 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC38.03■■■■□ 3.68
CSB-PGBD3P0DP91 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
CSB-PGBD3P0DP91 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC37.95■■■■□ 3.67
CSB-PGBD3P0DP91 AL162393.1-201ENST00000437852 946 ntBASIC37.94■■■■□ 3.66
CSB-PGBD3P0DP91 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
CSB-PGBD3P0DP91 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC37.93■■■■□ 3.66
CSB-PGBD3P0DP91 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC37.91■■■■□ 3.66
CSB-PGBD3P0DP91 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
CSB-PGBD3P0DP91 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
CSB-PGBD3P0DP91 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
CSB-PGBD3P0DP91 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
CSB-PGBD3P0DP91 AL391121.1-201ENST00000607967 1349 ntBASIC37.88■■■■□ 3.66
CSB-PGBD3P0DP91 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC37.88■■■■□ 3.65
CSB-PGBD3P0DP91 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC37.86■■■■□ 3.65
CSB-PGBD3P0DP91 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
CSB-PGBD3P0DP91 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC37.85■■■■□ 3.65
CSB-PGBD3P0DP91 NRG1-221ENST00000614767 762 ntTSL 5 BASIC37.85■■■■□ 3.65
CSB-PGBD3P0DP91 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC37.83■■■■□ 3.65
CSB-PGBD3P0DP91 AP006261.1-201ENST00000584783 668 ntBASIC37.83■■■■□ 3.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms