Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AL031258.1-201ENST00000623562 325 ntBASIC29.09■■■□□ 2.25
CACNA1AO00555 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
CACNA1AO00555 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CACNA1AO00555 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
CACNA1AO00555 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.01■■■□□ 2.23
CACNA1AO00555 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.01■■■□□ 2.23
CACNA1AO00555 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC28.98■■■□□ 2.23
CACNA1AO00555 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC28.95■■■□□ 2.23
CACNA1AO00555 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
CACNA1AO00555 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
CACNA1AO00555 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC28.94■■■□□ 2.22
CACNA1AO00555 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
CACNA1AO00555 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CACNA1AO00555 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CACNA1AO00555 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.87■■■□□ 2.21
CACNA1AO00555 AL162393.1-201ENST00000437852 946 ntBASIC28.86■■■□□ 2.21
CACNA1AO00555 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
CACNA1AO00555 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC28.83■■■□□ 2.21
CACNA1AO00555 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CACNA1AO00555 SETD8P1-201ENST00000623146 1180 ntBASIC28.82■■■□□ 2.2
CACNA1AO00555 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
CACNA1AO00555 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.81■■■□□ 2.2
CACNA1AO00555 HLA-V-202ENST00000446817 847 ntBASIC28.8■■■□□ 2.2
CACNA1AO00555 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC28.78■■■□□ 2.2
CACNA1AO00555 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC28.78■■■□□ 2.2
CACNA1AO00555 NRG1-221ENST00000614767 762 ntTSL 5 BASIC28.77■■■□□ 2.2
CACNA1AO00555 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CACNA1AO00555 MIR7108-201ENST00000614319 87 ntBASIC28.75■■■□□ 2.19
CACNA1AO00555 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC28.74■■■□□ 2.19
CACNA1AO00555 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CACNA1AO00555 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CACNA1AO00555 AP006261.1-201ENST00000584783 668 ntBASIC28.67■■■□□ 2.18
CACNA1AO00555 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CACNA1AO00555 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.63■■■□□ 2.17
CACNA1AO00555 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.61■■■□□ 2.17
CACNA1AO00555 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CACNA1AO00555 ABHD17AP4-201ENST00000411545 909 ntBASIC28.59■■■□□ 2.17
CACNA1AO00555 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CACNA1AO00555 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CACNA1AO00555 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.57■■■□□ 2.16
CACNA1AO00555 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CACNA1AO00555 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC28.54■■■□□ 2.16
CACNA1AO00555 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1AO00555 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
CACNA1AO00555 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
CACNA1AO00555 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.5■■■□□ 2.15
CACNA1AO00555 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CACNA1AO00555 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.49■■■□□ 2.15
CACNA1AO00555 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
CACNA1AO00555 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.45■■■□□ 2.15
CACNA1AO00555 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.45■■■□□ 2.14
CACNA1AO00555 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CACNA1AO00555 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC28.41■■■□□ 2.14
CACNA1AO00555 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.41■■■□□ 2.14
CACNA1AO00555 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
CACNA1AO00555 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
CACNA1AO00555 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.36■■■□□ 2.13
CACNA1AO00555 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.36■■■□□ 2.13
CACNA1AO00555 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.36■■■□□ 2.13
CACNA1AO00555 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CACNA1AO00555 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
CACNA1AO00555 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
CACNA1AO00555 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.3■■■□□ 2.12
CACNA1AO00555 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.29■■■□□ 2.12
CACNA1AO00555 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.27■■■□□ 2.12
CACNA1AO00555 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
CACNA1AO00555 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CACNA1AO00555 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.25■■■□□ 2.11
CACNA1AO00555 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC28.24■■■□□ 2.11
CACNA1AO00555 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CACNA1AO00555 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.23■■■□□ 2.11
CACNA1AO00555 CAHM-201ENST00000604200 896 ntBASIC28.22■■■□□ 2.11
CACNA1AO00555 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CACNA1AO00555 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
CACNA1AO00555 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.18■■■□□ 2.1
CACNA1AO00555 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
CACNA1AO00555 AL391121.1-201ENST00000607967 1349 ntBASIC28.13■■■□□ 2.09
CACNA1AO00555 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.13■■■□□ 2.09
CACNA1AO00555 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC28.12■■■□□ 2.09
CACNA1AO00555 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
CACNA1AO00555 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.08■■■□□ 2.09
CACNA1AO00555 MIR3665-201ENST00000578708 105 ntBASIC28.07■■■□□ 2.08
CACNA1AO00555 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CACNA1AO00555 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.07■■■□□ 2.08
CACNA1AO00555 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CACNA1AO00555 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.06■■■□□ 2.08
CACNA1AO00555 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CACNA1AO00555 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.02■■■□□ 2.08
CACNA1AO00555 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.02■■■□□ 2.08
CACNA1AO00555 MIR4449-201ENST00000578365 66 ntBASIC28.02■■■□□ 2.08
CACNA1AO00555 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.01■■■□□ 2.08
CACNA1AO00555 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28■■■□□ 2.07
CACNA1AO00555 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
CACNA1AO00555 AC087741.3-201ENST00000624270 1347 ntBASIC27.98■■■□□ 2.07
CACNA1AO00555 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
CACNA1AO00555 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC27.97■■■□□ 2.07
CACNA1AO00555 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
CACNA1AO00555 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.95■■■□□ 2.06
CACNA1AO00555 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC27.94■■■□□ 2.06
CACNA1AO00555 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.93■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms