Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC45.41■■■■■ 4.86
SHROOM4Q9ULL8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC45.41■■■■■ 4.86
SHROOM4Q9ULL8 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC45.41■■■■■ 4.86
SHROOM4Q9ULL8 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC45.41■■■■■ 4.86
SHROOM4Q9ULL8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC45.41■■■■■ 4.86
SHROOM4Q9ULL8 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC45.4■■■■■ 4.86
SHROOM4Q9ULL8 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC45.4■■■■■ 4.86
SHROOM4Q9ULL8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC45.4■■■■■ 4.86
SHROOM4Q9ULL8 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC45.4■■■■■ 4.86
SHROOM4Q9ULL8 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC45.39■■■■■ 4.86
SHROOM4Q9ULL8 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC45.39■■■■■ 4.86
SHROOM4Q9ULL8 MIR5787-201ENST00000611784 55 ntBASIC45.39■■■■■ 4.86
SHROOM4Q9ULL8 AC106739.1-201ENST00000617035 715 ntBASIC45.39■■■■■ 4.86
SHROOM4Q9ULL8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC45.38■■■■■ 4.86
SHROOM4Q9ULL8 MTDHP2-201ENST00000601468 714 ntBASIC45.38■■■■■ 4.86
SHROOM4Q9ULL8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC45.38■■■■■ 4.85
SHROOM4Q9ULL8 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC45.38■■■■■ 4.85
SHROOM4Q9ULL8 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC45.38■■■■■ 4.85
SHROOM4Q9ULL8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC45.36■■■■■ 4.85
SHROOM4Q9ULL8 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC45.36■■■■■ 4.85
SHROOM4Q9ULL8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC45.35■■■■■ 4.85
SHROOM4Q9ULL8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC45.35■■■■■ 4.85
SHROOM4Q9ULL8 TK2-202ENST00000417693 1046 ntTSL 2 BASIC45.35■■■■■ 4.85
SHROOM4Q9ULL8 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC45.35■■■■■ 4.85
SHROOM4Q9ULL8 AL031432.3-201ENST00000607698 485 ntBASIC45.35■■■■■ 4.85
SHROOM4Q9ULL8 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC45.34■■■■■ 4.85
SHROOM4Q9ULL8 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC45.34■■■■■ 4.85
SHROOM4Q9ULL8 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC45.34■■■■■ 4.85
SHROOM4Q9ULL8 SENP5-202ENST00000419026 973 ntTSL 3 BASIC45.33■■■■■ 4.85
SHROOM4Q9ULL8 AL356740.2-201ENST00000601559 647 ntBASIC45.33■■■■■ 4.85
SHROOM4Q9ULL8 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC45.31■■■■■ 4.84
SHROOM4Q9ULL8 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC45.3■■■■■ 4.84
SHROOM4Q9ULL8 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC45.3■■■■■ 4.84
SHROOM4Q9ULL8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC45.29■■■■■ 4.84
SHROOM4Q9ULL8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC45.29■■■■■ 4.84
SHROOM4Q9ULL8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC45.29■■■■■ 4.84
SHROOM4Q9ULL8 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC45.28■■■■■ 4.84
SHROOM4Q9ULL8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC45.28■■■■■ 4.84
SHROOM4Q9ULL8 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC45.27■■■■■ 4.84
SHROOM4Q9ULL8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC45.26■■■■■ 4.84
SHROOM4Q9ULL8 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 SUDS3P1-201ENST00000505831 966 ntBASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC45.25■■■■■ 4.83
SHROOM4Q9ULL8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC45.24■■■■■ 4.83
SHROOM4Q9ULL8 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC45.24■■■■■ 4.83
SHROOM4Q9ULL8 RASSF1-AS1-201ENST00000629828 790 ntBASIC45.24■■■■■ 4.83
SHROOM4Q9ULL8 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC45.24■■■■■ 4.83
SHROOM4Q9ULL8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC45.23■■■■■ 4.83
SHROOM4Q9ULL8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC45.23■■■■■ 4.83
SHROOM4Q9ULL8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC45.23■■■■■ 4.83
SHROOM4Q9ULL8 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC45.23■■■■■ 4.83
SHROOM4Q9ULL8 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC45.22■■■■■ 4.83
SHROOM4Q9ULL8 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC45.22■■■■■ 4.83
SHROOM4Q9ULL8 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC45.21■■■■■ 4.83
SHROOM4Q9ULL8 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC45.21■■■■■ 4.83
SHROOM4Q9ULL8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC45.21■■■■■ 4.83
SHROOM4Q9ULL8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC45.21■■■■■ 4.83
SHROOM4Q9ULL8 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC45.21■■■■■ 4.83
SHROOM4Q9ULL8 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC45.2■■■■■ 4.83
SHROOM4Q9ULL8 AC011551.1-201ENST00000614101 683 ntBASIC45.2■■■■■ 4.83
SHROOM4Q9ULL8 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC45.2■■■■■ 4.83
SHROOM4Q9ULL8 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC45.19■■■■■ 4.82
SHROOM4Q9ULL8 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC45.19■■■■■ 4.82
SHROOM4Q9ULL8 AC142381.2-201ENST00000566120 298 ntBASIC45.18■■■■■ 4.82
SHROOM4Q9ULL8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC45.17■■■■■ 4.82
SHROOM4Q9ULL8 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC45.17■■■■■ 4.82
SHROOM4Q9ULL8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC45.17■■■■■ 4.82
SHROOM4Q9ULL8 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC45.16■■■■■ 4.82
SHROOM4Q9ULL8 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC45.15■■■■■ 4.82
SHROOM4Q9ULL8 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC45.15■■■■■ 4.82
SHROOM4Q9ULL8 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC45.15■■■■■ 4.82
SHROOM4Q9ULL8 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC45.15■■■■■ 4.82
SHROOM4Q9ULL8 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC45.15■■■■■ 4.82
SHROOM4Q9ULL8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC45.14■■■■■ 4.82
SHROOM4Q9ULL8 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC45.14■■■■■ 4.82
SHROOM4Q9ULL8 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC45.14■■■■■ 4.82
SHROOM4Q9ULL8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC45.14■■■■■ 4.82
SHROOM4Q9ULL8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC45.13■■■■■ 4.82
SHROOM4Q9ULL8 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC45.13■■■■■ 4.82
SHROOM4Q9ULL8 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC45.13■■■■■ 4.81
SHROOM4Q9ULL8 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC45.13■■■■■ 4.81
SHROOM4Q9ULL8 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC45.13■■■■■ 4.81
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms