Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HLA-DMBP28068 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC17.9■□□□□ 0.46
HLA-DMBP28068 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HLA-DMBP28068 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HLA-DMBP28068 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HLA-DMBP28068 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HLA-DMBP28068 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HLA-DMBP28068 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DMBP28068 ABHD17AP5-201ENST00000580133 923 ntBASIC17.89■□□□□ 0.45
HLA-DMBP28068 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.89■□□□□ 0.45
HLA-DMBP28068 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DMBP28068 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DMBP28068 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DMBP28068 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HLA-DMBP28068 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
HLA-DMBP28068 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DMBP28068 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DMBP28068 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DMBP28068 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HLA-DMBP28068 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC17.88■□□□□ 0.45
HLA-DMBP28068 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
HLA-DMBP28068 ECEL1P2-201ENST00000461596 1295 ntBASIC17.87■□□□□ 0.45
HLA-DMBP28068 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.87■□□□□ 0.45
HLA-DMBP28068 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HLA-DMBP28068 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HLA-DMBP28068 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 RP9P-202ENST00000450133 1212 ntBASIC17.86■□□□□ 0.45
HLA-DMBP28068 AC093536.1-201ENST00000569153 554 ntBASIC17.86■□□□□ 0.45
HLA-DMBP28068 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 EED-207ENST00000528180 1745 ntTSL 5 BASIC17.86■□□□□ 0.45
HLA-DMBP28068 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HLA-DMBP28068 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC17.85■□□□□ 0.45
HLA-DMBP28068 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HLA-DMBP28068 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DMBP28068 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HLA-DMBP28068 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DMBP28068 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
HLA-DMBP28068 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HLA-DMBP28068 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC17.84■□□□□ 0.45
HLA-DMBP28068 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.83■□□□□ 0.45
HLA-DMBP28068 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HLA-DMBP28068 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.83■□□□□ 0.44
HLA-DMBP28068 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC17.83■□□□□ 0.44
HLA-DMBP28068 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HLA-DMBP28068 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC17.83■□□□□ 0.44
HLA-DMBP28068 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC17.83■□□□□ 0.44
HLA-DMBP28068 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HLA-DMBP28068 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC17.82■□□□□ 0.44
HLA-DMBP28068 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DMBP28068 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DMBP28068 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HLA-DMBP28068 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HLA-DMBP28068 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms