Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A6A6NMZ7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A6A6NMZ7 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A6A6NMZ7 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.64■■□□□ 1.05
COL6A6A6NMZ7 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.64■■□□□ 1.05
COL6A6A6NMZ7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL6A6A6NMZ7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A6A6NMZ7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.62■■□□□ 1.05
COL6A6A6NMZ7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.62■■□□□ 1.05
COL6A6A6NMZ7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL6A6A6NMZ7 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.61■■□□□ 1.05
COL6A6A6NMZ7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL6A6A6NMZ7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL6A6A6NMZ7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
COL6A6A6NMZ7 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.61■■□□□ 1.05
COL6A6A6NMZ7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 AF131216.4-201ENST00000638924 1588 ntBASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.6■■□□□ 1.05
COL6A6A6NMZ7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A6A6NMZ7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.58■■□□□ 1.05
COL6A6A6NMZ7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.58■■□□□ 1.05
COL6A6A6NMZ7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.04
COL6A6A6NMZ7 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.58■■□□□ 1.04
COL6A6A6NMZ7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 AC022517.1-201ENST00000592429 346 ntBASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL6A6A6NMZ7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
COL6A6A6NMZ7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL6A6A6NMZ7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL6A6A6NMZ7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 DUX4L19-201ENST00000557448 1267 ntBASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.55■■□□□ 1.04
COL6A6A6NMZ7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 SNX5-217ENST00000606557 1087 ntBASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 AC092437.1-201ENST00000624794 1048 ntBASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
COL6A6A6NMZ7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
COL6A6A6NMZ7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.53■■□□□ 1.04
COL6A6A6NMZ7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.53■■□□□ 1.04
COL6A6A6NMZ7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
COL6A6A6NMZ7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.52■■□□□ 1.04
COL6A6A6NMZ7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.52■■□□□ 1.04
COL6A6A6NMZ7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL6A6A6NMZ7 CA15P2-201ENST00000611168 834 ntBASIC21.52■■□□□ 1.03
COL6A6A6NMZ7 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.52■■□□□ 1.03
COL6A6A6NMZ7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 IRS3P-201ENST00000223076 1006 ntBASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A6A6NMZ7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 AL449106.1-201ENST00000608517 1980 ntBASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
COL6A6A6NMZ7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms