Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.43e-7■□□□□ 11.2
LIN28BQ6ZN17 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC8.54□□□□□ -1.041e-7■□□□□ 11.2
LIN28BQ6ZN17 HNRNPA1-212ENST00000551679 359 ntTSL 26.22□□□□□ -1.411e-13■□□□□ 11.2
LIN28BQ6ZN17 TMEM214-213ENST00000495312 804 ntTSL 231.44■■■□□ 2.623e-7■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-206ENST00000498135 776 ntTSL 323.29■■□□□ 1.321e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-203ENST00000480937 1102 ntTSL 222.33■■□□□ 1.171e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-202ENST00000468704 799 ntTSL 319.45■□□□□ 0.71e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM214-202ENST00000321326 2700 ntTSL 219.14■□□□□ 0.653e-7■□□□□ 11.2
LIN28BQ6ZN17 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.98■□□□□ 0.633e-7■□□□□ 11.2
LIN28BQ6ZN17 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.193e-7■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-205ENST00000491936 965 ntTSL 1 (best)15.58■□□□□ 0.081e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.041e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM214-212ENST00000478980 572 ntTSL 29.11□□□□□ -0.953e-7■□□□□ 11.2
LIN28BQ6ZN17 TMEM50A-204ENST00000487234 511 ntTSL 33.58□□□□□ -1.841e-6■□□□□ 11.2
LIN28BQ6ZN17 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.66□□□□□ -0.221e-7■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC31.71■■■□□ 2.671e-8■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-211ENST00000544336 1164 ntTSL 1 (best)31.71■■■□□ 2.671e-8■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-214ENST00000480062 508 ntTSL 229.41■■■□□ 2.34e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-204ENST00000420104 482 ntTSL 328.32■■■□□ 2.124e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-217ENST00000489598 1039 ntTSL 228.32■■■□□ 2.124e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-203ENST00000414983 713 ntTSL 328.15■■■□□ 2.14e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-218ENST00000491780 577 ntTSL 427.98■■■□□ 2.074e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-205ENST00000420201 732 ntTSL 327.72■■■□□ 2.034e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.964e-11■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.934e-11■□□□□ 11.2
LIN28BQ6ZN17 AMFR-211ENST00000568657 539 ntTSL 425.73■■□□□ 1.717e-6■□□□□ 11.2
LIN28BQ6ZN17 LMNB2-204ENST00000527409 838 ntTSL 525.33■■□□□ 1.657e-6■□□□□ 11.2
LIN28BQ6ZN17 AMFR-206ENST00000565445 803 ntTSL 524.32■■□□□ 1.487e-6■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.45■■□□□ 1.191e-8■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.32■□□□□ 0.841e-8■□□□□ 11.2
LIN28BQ6ZN17 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.22■□□□□ 0.837e-6■□□□□ 11.2
LIN28BQ6ZN17 LMNB2-202ENST00000475819 885 ntTSL 518.99■□□□□ 0.635e-10■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-215ENST00000529882 544 ntTSL 418.59■□□□□ 0.577e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.567e-6■□□□□ 11.2
LIN28BQ6ZN17 GGA2-208ENST00000566685 571 ntTSL 418.31■□□□□ 0.521e-8■□□□□ 11.2
LIN28BQ6ZN17 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.527e-6■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-215ENST00000484961 722 ntTSL 318.16■□□□□ 0.54e-11■□□□□ 11.2
LIN28BQ6ZN17 LMNB2-203ENST00000490554 689 ntTSL 218.05■□□□□ 0.487e-6■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.78■□□□□ 0.287e-6■□□□□ 11.2
LIN28BQ6ZN17 CAPN2-212ENST00000498027 1405 ntTSL 216.3■□□□□ 0.27e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.01■□□□□ 0.157e-6■□□□□ 11.2
LIN28BQ6ZN17 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.147e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.017e-6■□□□□ 11.2
LIN28BQ6ZN17 SLC2A1-208ENST00000630287 2398 ntTSL 515.1■□□□□ 0.011e-14■□□□□ 11.2
LIN28BQ6ZN17 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.037e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.087e-6■□□□□ 11.2
LIN28BQ6ZN17 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.17e-11■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC14.02□□□□□ -0.171e-8■□□□□ 11.2
LIN28BQ6ZN17 TRIM65-205ENST00000591668 644 ntTSL 213.92□□□□□ -0.187e-11■□□□□ 11.2
LIN28BQ6ZN17 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.217e-6■□□□□ 11.2
LIN28BQ6ZN17 GGA2-213ENST00000568922 1807 ntTSL 213.33□□□□□ -0.281e-8■□□□□ 11.2
LIN28BQ6ZN17 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.467e-6■□□□□ 11.2
LIN28BQ6ZN17 MYL4-204ENST00000570671 740 ntTSL 212.09□□□□□ -0.477e-6■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-201ENST00000314674 980 ntTSL 5 BASIC12.08□□□□□ -0.487e-6■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-203ENST00000367822 2793 ntTSL 1 (best) BASIC12.03□□□□□ -0.487e-6■□□□□ 11.2
LIN28BQ6ZN17 SMIM15-201ENST00000339020 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.537e-6■□□□□ 11.2
LIN28BQ6ZN17 MYL4-210ENST00000576874 641 ntTSL 311.53□□□□□ -0.567e-6■□□□□ 11.2
LIN28BQ6ZN17 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.571e-14■□□□□ 11.2
LIN28BQ6ZN17 GRAP2-201ENST00000344138 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.617e-6■□□□□ 11.2
LIN28BQ6ZN17 AMFR-204ENST00000563664 567 ntTSL 410.95□□□□□ -0.667e-6■□□□□ 11.2
LIN28BQ6ZN17 MYL4-203ENST00000536623 650 ntTSL 510.92□□□□□ -0.667e-6■□□□□ 11.2
LIN28BQ6ZN17 TRIM65-206ENST00000592642 396 ntTSL 310.85□□□□□ -0.677e-11■□□□□ 11.2
LIN28BQ6ZN17 GGA2-210ENST00000567339 293 ntTSL 310.85□□□□□ -0.671e-8■□□□□ 11.2
LIN28BQ6ZN17 CTNNA1-221ENST00000520339 868 ntTSL 310.64□□□□□ -0.717e-6■□□□□ 11.2
LIN28BQ6ZN17 CELF1-204ENST00000395290 7666 ntAPPRIS ALT1 TSL 2 BASIC10.53□□□□□ -0.727e-6■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-209ENST00000470146 2226 ntTSL 210.17□□□□□ -0.784e-11■□□□□ 11.2
LIN28BQ6ZN17 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC9.98□□□□□ -0.811e-8■□□□□ 11.2
LIN28BQ6ZN17 YWHAG-201ENST00000307630 3750 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.815e-9■□□□□ 11.2
LIN28BQ6ZN17 GMFG-210ENST00000601387 497 ntTSL 3 BASIC9.48□□□□□ -0.897e-6■□□□□ 11.2
LIN28BQ6ZN17 MYL4-209ENST00000573747 640 ntTSL 59.47□□□□□ -0.897e-6■□□□□ 11.2
LIN28BQ6ZN17 ARPC2-208ENST00000465395 816 ntTSL 29.23□□□□□ -0.934e-11■□□□□ 11.2
LIN28BQ6ZN17 GMFG-205ENST00000596583 490 ntTSL 38.93□□□□□ -0.987e-6■□□□□ 11.2
LIN28BQ6ZN17 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC8.9□□□□□ -0.987e-6■□□□□ 11.2
LIN28BQ6ZN17 DLD-207ENST00000451081 930 ntTSL 1 (best)8.87□□□□□ -0.991e-8■□□□□ 11.2
LIN28BQ6ZN17 GMFG-204ENST00000595636 487 ntTSL 2 BASIC8.74□□□□□ -1.017e-6■□□□□ 11.2
LIN28BQ6ZN17 GRAP2-203ENST00000420971 568 ntTSL 28.43□□□□□ -1.067e-6■□□□□ 11.2
LIN28BQ6ZN17 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.17e-6■□□□□ 11.2
LIN28BQ6ZN17 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.77□□□□□ -1.172e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-201ENST00000253054 616 ntTSL 5 BASIC7.57□□□□□ -1.27e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-211ENST00000601731 405 ntTSL 37.4□□□□□ -1.227e-6■□□□□ 11.2
LIN28BQ6ZN17 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.241e-8■□□□□ 11.2
LIN28BQ6ZN17 GRAP2-206ENST00000478445 583 ntTSL 47.14□□□□□ -1.277e-6■□□□□ 11.2
LIN28BQ6ZN17 PDCD2-206ENST00000538195 560 ntTSL 56.8□□□□□ -1.321e-8■□□□□ 11.2
LIN28BQ6ZN17 GMFG-203ENST00000595207 526 ntTSL 36.75□□□□□ -1.337e-6■□□□□ 11.2
LIN28BQ6ZN17 ZCCHC7-206ENST00000488607 884 ntTSL 26.67□□□□□ -1.347e-6■□□□□ 11.2
LIN28BQ6ZN17 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.51□□□□□ -1.371e-8■□□□□ 11.2
LIN28BQ6ZN17 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.49□□□□□ -1.377e-6■□□□□ 11.2
LIN28BQ6ZN17 CD2AP-203ENST00000477159 611 ntTSL 36.03□□□□□ -1.447e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-201ENST00000271411 13945 ntTSL 1 (best)5.87□□□□□ -1.477e-6■□□□□ 11.2
LIN28BQ6ZN17 TTC27-202ENST00000428527 687 ntTSL 35.67□□□□□ -1.57e-6■□□□□ 11.2
LIN28BQ6ZN17 TMEM56-RWDD3-201ENST00000604203 680 ntTSL 35.58□□□□□ -1.527e-6■□□□□ 11.2
LIN28BQ6ZN17 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.43□□□□□ -1.547e-6■□□□□ 11.2
LIN28BQ6ZN17 YIPF4-202ENST00000437765 728 ntTSL 55.36□□□□□ -1.557e-6■□□□□ 11.2
LIN28BQ6ZN17 SEC63-202ENST00000429168 647 ntTSL 55.3□□□□□ -1.567e-9■□□□□ 11.2
LIN28BQ6ZN17 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.617e-6■□□□□ 11.2
LIN28BQ6ZN17 CTNNA1-241ENST00000524127 483 ntTSL 44.83□□□□□ -1.647e-6■□□□□ 11.2
LIN28BQ6ZN17 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.641e-8■□□□□ 11.2
LIN28BQ6ZN17 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.55□□□□□ -1.687e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.697e-6■□□□□ 11.2
LIN28BQ6ZN17 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.697e-6■□□□□ 11.2
Retrieved 100 of 21,972 protein–RNA pairs in 247.3 ms