RNA–Protein interactions for RNA: ENST00000520339.5

CTNNA1-221, Transcript of catenin alpha 1, humanhuman

TSL 3

Gene CTNNA1, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-221ENST00000520339 AEBP2Q6ZN18 517 aaPredicted RBP25.98■■□□□ 1.75
CTNNA1-221ENST00000520339 CHIC1Q5VXU3 224 aa25.92■■□□□ 1.74
CTNNA1-221ENST00000520339 NISCHQ9Y2I1 1504 aa23.02■■□□□ 1.28
CTNNA1-221ENST00000520339 PHF23Q9BUL5 403 aaPredicted RBP22.89■■□□□ 1.25
CTNNA1-221ENST00000520339 SENP3Q9H4L4 574 aaPredicted RBP21.93■■□□□ 1.1
CTNNA1-221ENST00000520339 PLPPR3Q6T4P5 718 aa21.32■■□□□ 1
CTNNA1-221ENST00000520339 ABCC9O60706 1549 aa20.57■□□□□ 0.88
CTNNA1-221ENST00000520339 CCDC180Q9P1Z9 1646 aa20.46■□□□□ 0.87
CTNNA1-221ENST00000520339 FOXD1Q16676 465 aa20.31■□□□□ 0.84
CTNNA1-221ENST00000520339 ADRA2BP18089 450 aa20.06■□□□□ 0.8
CTNNA1-221ENST00000520339 PPP6R1Q9UPN7 881 aa20.02■□□□□ 0.8
CTNNA1-221ENST00000520339 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
CTNNA1-221ENST00000520339 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
CTNNA1-221ENST00000520339 NACADO15069 1562 aa19.45■□□□□ 0.7
CTNNA1-221ENST00000520339 DNAJC5BQ9UF47 199 aa19.36■□□□□ 0.69
CTNNA1-221ENST00000520339 PIAS4Q8N2W9 510 aaPredicted RBP19.31■□□□□ 0.68
CTNNA1-221ENST00000520339 PABPN1Q86U42 306 aaKnown RBP eCLIP19.25■□□□□ 0.67
CTNNA1-221ENST00000520339 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
CTNNA1-221ENST00000520339 KCNA4P22459 653 aa19.13■□□□□ 0.65
CTNNA1-221ENST00000520339 ZCCHC6Q5VYS8 1495 aaKnown RBP19.08■□□□□ 0.64
CTNNA1-221ENST00000520339 DCAF1Q9Y4B6 1507 aa19.01■□□□□ 0.63
CTNNA1-221ENST00000520339 BICRAQ9NZM4 1560 aa18.98■□□□□ 0.63
CTNNA1-221ENST00000520339 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
CTNNA1-221ENST00000520339 PPP4R3CPQ6ZMV5 832 aa18.89■□□□□ 0.61
CTNNA1-221ENST00000520339 SHROOM4Q9ULL8 1493 aa18.75■□□□□ 0.59
CTNNA1-221ENST00000520339 SCRIBQ14160 1630 aa18.71■□□□□ 0.59
CTNNA1-221ENST00000520339 NCBP3Q53F19 620 aaKnown RBP18.56■□□□□ 0.56
CTNNA1-221ENST00000520339 CECR2Q9BXF3 1484 aa18.53■□□□□ 0.56
CTNNA1-221ENST00000520339 EHMT2Q96KQ7 1210 aa18.52■□□□□ 0.56
CTNNA1-221ENST00000520339 CC2D2AQ9P2K1 1620 aa18.51■□□□□ 0.55
CTNNA1-221ENST00000520339 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
CTNNA1-221ENST00000520339 MSH5O43196 834 aa18.46■□□□□ 0.55
CTNNA1-221ENST00000520339 SCAF1Q9H7N4 1312 aaKnown RBP18.32■□□□□ 0.52
CTNNA1-221ENST00000520339 SLC4A1APQ9BWU0 796 aaKnown RBP18.32■□□□□ 0.52
CTNNA1-221ENST00000520339 NPM3O75607 178 aaKnown RBP18.29■□□□□ 0.52
CTNNA1-221ENST00000520339 CNKSR2Q8WXI2 1034 aa18.2■□□□□ 0.5
CTNNA1-221ENST00000520339 NCAPD3P42695 1498 aa18.04■□□□□ 0.48
CTNNA1-221ENST00000520339 MAPK8IP2Q13387 824 aaPredicted RBP18.04■□□□□ 0.48
CTNNA1-221ENST00000520339 CSRNP3Q8WYN3 585 aa17.99■□□□□ 0.47
CTNNA1-221ENST00000520339 ATAD2BQ9ULI0 1458 aa17.98■□□□□ 0.47
CTNNA1-221ENST00000520339 SMARCA2P51531 1590 aa17.86■□□□□ 0.45
CTNNA1-221ENST00000520339 SMARCA4P51532 1647 aa17.86■□□□□ 0.45
CTNNA1-221ENST00000520339 BAZ1AQ9NRL2 1556 aaPredicted RBP17.82■□□□□ 0.44
CTNNA1-221ENST00000520339 HMGXB3Q12766 1538 aa17.81■□□□□ 0.44
CTNNA1-221ENST00000520339 BAZ1BQ9UIG0 1483 aaKnown RBP17.75■□□□□ 0.43
CTNNA1-221ENST00000520339 DNAJC5Q9H3Z4 198 aa17.75■□□□□ 0.43
CTNNA1-221ENST00000520339 MROH2BQ7Z745 1585 aa17.74■□□□□ 0.43
CTNNA1-221ENST00000520339 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
CTNNA1-221ENST00000520339 PEG3Q9GZU2 1588 aa17.72■□□□□ 0.43
CTNNA1-221ENST00000520339 RNF216Q9NWF9 866 aaPredicted RBP17.69■□□□□ 0.42
CTNNA1-221ENST00000520339 CUX2O14529 1486 aa17.69■□□□□ 0.42
CTNNA1-221ENST00000520339 NESP48681 1621 aa17.69■□□□□ 0.42
CTNNA1-221ENST00000520339 ZBTB22O15209 634 aa17.6■□□□□ 0.41
CTNNA1-221ENST00000520339 DMRT2Q9Y5R5 561 aa17.6■□□□□ 0.41
CTNNA1-221ENST00000520339 CADPSQ9ULU8 1353 aa17.52■□□□□ 0.39
CTNNA1-221ENST00000520339 LAMC3Q9Y6N6 1575 aa17.5■□□□□ 0.39
CTNNA1-221ENST00000520339 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
CTNNA1-221ENST00000520339 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
CTNNA1-221ENST00000520339 HOXD11P31277 338 aaPredicted RBP17.45■□□□□ 0.38
CTNNA1-221ENST00000520339 WIZO95785 1651 aa17.44■□□□□ 0.38
CTNNA1-221ENST00000520339 FOXD4L1Q9NU39 408 aa17.4■□□□□ 0.38
CTNNA1-221ENST00000520339 THOC2Q8NI27 1593 aaKnown RBP17.39■□□□□ 0.37
CTNNA1-221ENST00000520339 MRC2Q9UBG0 1479 aa17.31■□□□□ 0.36
CTNNA1-221ENST00000520339 CFTRP13569 1480 aa17.3■□□□□ 0.36
CTNNA1-221ENST00000520339 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
CTNNA1-221ENST00000520339 TOP2AP11388 1531 aaKnown RBP17.27■□□□□ 0.36
CTNNA1-221ENST00000520339 FANCD2Q9BXW9 1451 aa17.25■□□□□ 0.35
CTNNA1-221ENST00000520339 CEP164Q9UPV0 1460 aa17.24■□□□□ 0.35
CTNNA1-221ENST00000520339 WDR62O43379 1518 aa17.23■□□□□ 0.35
CTNNA1-221ENST00000520339 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
CTNNA1-221ENST00000520339 SLC4A2P04920 1241 aa17.12■□□□□ 0.33
CTNNA1-221ENST00000520339 URB2Q14146 1524 aaKnown RBP17.1■□□□□ 0.33
CTNNA1-221ENST00000520339 OSCARQ8IYS5 282 aa16.99■□□□□ 0.31
CTNNA1-221ENST00000520339 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
CTNNA1-221ENST00000520339 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
CTNNA1-221ENST00000520339 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
CTNNA1-221ENST00000520339 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
CTNNA1-221ENST00000520339 POTEDQ86YR6 584 aa16.9■□□□□ 0.3
CTNNA1-221ENST00000520339 ZNF608Q9ULD9 1512 aaPredicted RBP16.9■□□□□ 0.3
CTNNA1-221ENST00000520339 ABCC8Q09428 1581 aa16.89■□□□□ 0.3
CTNNA1-221ENST00000520339 MYCNP04198 464 aaPredicted RBP16.86■□□□□ 0.29
CTNNA1-221ENST00000520339 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
CTNNA1-221ENST00000520339 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
CTNNA1-221ENST00000520339 AQRO60306 1485 aaKnown RBP eCLIP16.77■□□□□ 0.284e-6■■□□□ 13.8
CTNNA1-221ENST00000520339 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
CTNNA1-221ENST00000520339 SUPT5HO00267 1087 aaKnown RBP16.75■□□□□ 0.27
CTNNA1-221ENST00000520339 SOGA1O94964 1423 aa16.73■□□□□ 0.27
CTNNA1-221ENST00000520339 ATXN8OSP0DMR3 200 aa16.73■□□□□ 0.27
CTNNA1-221ENST00000520339 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
CTNNA1-221ENST00000520339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.71■□□□□ 0.27
CTNNA1-221ENST00000520339 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.27
CTNNA1-221ENST00000520339 TARBP1Q13395 1621 aaKnown RBP16.7■□□□□ 0.26
CTNNA1-221ENST00000520339 EIF4G3O43432 1585 aaKnown RBP16.68■□□□□ 0.26
CTNNA1-221ENST00000520339 FBLN2P98095 1184 aa16.67■□□□□ 0.26
CTNNA1-221ENST00000520339 FGD5Q6ZNL6 1462 aa16.65■□□□□ 0.26
CTNNA1-221ENST00000520339 CUX1P39880 1505 aa16.65■□□□□ 0.26
CTNNA1-221ENST00000520339 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
CTNNA1-221ENST00000520339 CYB5RLQ6IPT4 315 aa16.59■□□□□ 0.25
CTNNA1-221ENST00000520339 RIMBP3CA6NJZ7 1639 aa16.59■□□□□ 0.25
CTNNA1-221ENST00000520339 RIMBP3BA6NNM3 1639 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms