RNA–Protein interactions for RNA: ENST00000568922.1

GGA2-213, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, humanhuman

TSL 2

Gene GGA2, Length 1,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA2-213ENST00000568922 NISCHQ9Y2I1 1504 aa28.94■■■□□ 2.22
GGA2-213ENST00000568922 CCDC180Q9P1Z9 1646 aa25.38■■□□□ 1.65
GGA2-213ENST00000568922 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
GGA2-213ENST00000568922 ABCC9O60706 1549 aa24■■□□□ 1.43
GGA2-213ENST00000568922 DCAF1Q9Y4B6 1507 aa23.98■■□□□ 1.43
GGA2-213ENST00000568922 DCAF8L2P0C7V8 631 aa23.85■■□□□ 1.41
GGA2-213ENST00000568922 MYO15BQ96JP2 1530 aa23.76■■□□□ 1.39
GGA2-213ENST00000568922 NACADO15069 1562 aa23.64■■□□□ 1.37
GGA2-213ENST00000568922 RB1CC1Q8TDY2 1594 aa23.47■■□□□ 1.35
GGA2-213ENST00000568922 SHROOM4Q9ULL8 1493 aa23.4■■□□□ 1.34
GGA2-213ENST00000568922 SCRIBQ14160 1630 aa23.23■■□□□ 1.31
GGA2-213ENST00000568922 UNC13AQ9UPW8 1703 aa22.99■■□□□ 1.27
GGA2-213ENST00000568922 BICRAQ9NZM4 1560 aa22.72■■□□□ 1.23
GGA2-213ENST00000568922 PABPN1Q86U42 306 aaKnown RBP eCLIP22.57■■□□□ 1.2
GGA2-213ENST00000568922 SUPT5HO00267 1087 aaKnown RBP22.45■■□□□ 1.18
GGA2-213ENST00000568922 CECR2Q9BXF3 1484 aa22.45■■□□□ 1.18
GGA2-213ENST00000568922 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
GGA2-213ENST00000568922 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
GGA2-213ENST00000568922 MROH2BQ7Z745 1585 aa22.32■■□□□ 1.16
GGA2-213ENST00000568922 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
GGA2-213ENST00000568922 WIZO95785 1651 aa22.15■■□□□ 1.14
GGA2-213ENST00000568922 EIF4G1Q04637 1599 aaKnown RBP22.06■■□□□ 1.12
GGA2-213ENST00000568922 PEG3Q9GZU2 1588 aa22.05■■□□□ 1.12
GGA2-213ENST00000568922 SMARCA2P51531 1590 aa21.96■■□□□ 1.11
GGA2-213ENST00000568922 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
GGA2-213ENST00000568922 ATAD2BQ9ULI0 1458 aa21.93■■□□□ 1.1
GGA2-213ENST00000568922 BAZ1BQ9UIG0 1483 aaKnown RBP21.81■■□□□ 1.08
GGA2-213ENST00000568922 NCAPD3P42695 1498 aa21.79■■□□□ 1.08
GGA2-213ENST00000568922 HMGXB3Q12766 1538 aa21.78■■□□□ 1.08
GGA2-213ENST00000568922 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.08
GGA2-213ENST00000568922 CCDC88BA6NC98 1476 aa21.67■■□□□ 1.06
GGA2-213ENST00000568922 CHIC1Q5VXU3 224 aa21.44■■□□□ 1.02
GGA2-213ENST00000568922 CFTRP13569 1480 aa21.26■□□□□ 0.99
GGA2-213ENST00000568922 DNAJC5BQ9UF47 199 aa21.23■□□□□ 0.99
GGA2-213ENST00000568922 PRDM2Q13029 1718 aa21.23■□□□□ 0.99
GGA2-213ENST00000568922 CADPSQ9ULU8 1353 aa21.2■□□□□ 0.98
GGA2-213ENST00000568922 ABCC8Q09428 1581 aa21.16■□□□□ 0.98
GGA2-213ENST00000568922 TRIM41Q8WV44 630 aa21.16■□□□□ 0.98
GGA2-213ENST00000568922 LAMC3Q9Y6N6 1575 aa21.11■□□□□ 0.97
GGA2-213ENST00000568922 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
GGA2-213ENST00000568922 NESP48681 1621 aa21.02■□□□□ 0.96
GGA2-213ENST00000568922 SYNJ1O43426 1573 aa20.99■□□□□ 0.95
GGA2-213ENST00000568922 FANCD2Q9BXW9 1451 aa20.97■□□□□ 0.95
GGA2-213ENST00000568922 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
GGA2-213ENST00000568922 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
GGA2-213ENST00000568922 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
GGA2-213ENST00000568922 CUX1P39880 1505 aa20.89■□□□□ 0.94
GGA2-213ENST00000568922 CEP164Q9UPV0 1460 aa20.87■□□□□ 0.93
GGA2-213ENST00000568922 KIF21AQ7Z4S6 1674 aa20.84■□□□□ 0.93
GGA2-213ENST00000568922 DNMBPQ6XZF7 1577 aa20.78■□□□□ 0.92
GGA2-213ENST00000568922 EEA1Q15075 1411 aa20.74■□□□□ 0.91
GGA2-213ENST00000568922 TOPBP1Q92547 1522 aa20.73■□□□□ 0.91
GGA2-213ENST00000568922 SOGA1O94964 1423 aa20.72■□□□□ 0.91
GGA2-213ENST00000568922 FAM9AQ8IZU1 332 aaPredicted RBP20.71■□□□□ 0.91
GGA2-213ENST00000568922 URB2Q14146 1524 aaKnown RBP20.71■□□□□ 0.91
GGA2-213ENST00000568922 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
GGA2-213ENST00000568922 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
GGA2-213ENST00000568922 RUSC2Q8N2Y8 1516 aa20.64■□□□□ 0.9
GGA2-213ENST00000568922 ERCC6Q03468 1493 aa20.62■□□□□ 0.89
GGA2-213ENST00000568922 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
GGA2-213ENST00000568922 CSRNP3Q8WYN3 585 aa20.57■□□□□ 0.88
GGA2-213ENST00000568922 LOC105371045A0A1W2PR82 267 aa20.57■□□□□ 0.88
GGA2-213ENST00000568922 KIF27Q86VH2 1401 aa20.57■□□□□ 0.88
GGA2-213ENST00000568922 WDR62O43379 1518 aa20.56■□□□□ 0.88
GGA2-213ENST00000568922 THOC2Q8NI27 1593 aaKnown RBP20.53■□□□□ 0.88
GGA2-213ENST00000568922 ABCA10Q8WWZ4 1543 aa20.53■□□□□ 0.88
GGA2-213ENST00000568922 CUX2O14529 1486 aa20.51■□□□□ 0.87
GGA2-213ENST00000568922 RAD54L2Q9Y4B4 1467 aa20.51■□□□□ 0.87
GGA2-213ENST00000568922 WDR97A6NE52 1622 aa20.51■□□□□ 0.87
GGA2-213ENST00000568922 KIF21BO75037 1637 aa20.48■□□□□ 0.87
GGA2-213ENST00000568922 TARBP1Q13395 1621 aaKnown RBP20.45■□□□□ 0.86
GGA2-213ENST00000568922 GOLGA3Q08378 1498 aa20.41■□□□□ 0.86
GGA2-213ENST00000568922 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
GGA2-213ENST00000568922 ABCA5Q8WWZ7 1642 aa20.39■□□□□ 0.85
GGA2-213ENST00000568922 IFT140Q96RY7 1462 aa20.38■□□□□ 0.85
GGA2-213ENST00000568922 PRXQ9BXM0 1461 aa20.38■□□□□ 0.85
GGA2-213ENST00000568922 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
GGA2-213ENST00000568922 IGF1RP08069 1367 aa20.35■□□□□ 0.85
GGA2-213ENST00000568922 GAPVD1Q14C86 1478 aa20.32■□□□□ 0.84
GGA2-213ENST00000568922 RAPGEF2Q9Y4G8 1499 aa20.32■□□□□ 0.84
GGA2-213ENST00000568922 TDRD9Q8NDG6 1382 aaKnown RBP20.31■□□□□ 0.84
GGA2-213ENST00000568922 TNIKQ9UKE5 1360 aa20.31■□□□□ 0.84
GGA2-213ENST00000568922 CUL7Q14999 1698 aa20.3■□□□□ 0.84
GGA2-213ENST00000568922 UBTFP17480 764 aaKnown RBP20.28■□□□□ 0.84
GGA2-213ENST00000568922 CARMIL1Q5VZK9 1371 aa20.27■□□□□ 0.84
GGA2-213ENST00000568922 PBRM1Q86U86 1689 aa20.27■□□□□ 0.83
GGA2-213ENST00000568922 ZNF608Q9ULD9 1512 aaPredicted RBP20.22■□□□□ 0.83
GGA2-213ENST00000568922 AQRO60306 1485 aaKnown RBP eCLIP20.21■□□□□ 0.836e-7■■■■■ 34.2
GGA2-213ENST00000568922 EIF4G3O43432 1585 aaKnown RBP20.2■□□□□ 0.82
GGA2-213ENST00000568922 GRIN2BQ13224 1484 aa20.19■□□□□ 0.82
GGA2-213ENST00000568922 CEP162Q5TB80 1403 aa20.17■□□□□ 0.82
GGA2-213ENST00000568922 ADAMTS12P58397 1594 aa20.12■□□□□ 0.81
GGA2-213ENST00000568922 FHAD1B1AJZ9 1412 aa20.11■□□□□ 0.81
GGA2-213ENST00000568922 CTTNBP2Q8WZ74 1663 aa20.06■□□□□ 0.8
GGA2-213ENST00000568922 CLIP1P30622 1438 aa20.06■□□□□ 0.8
GGA2-213ENST00000568922 SNAPC4Q5SXM2 1469 aa20.06■□□□□ 0.8
GGA2-213ENST00000568922 MAGI1Q96QZ7 1491 aaPredicted RBP20.06■□□□□ 0.8
GGA2-213ENST00000568922 SYNJ2O15056 1496 aa19.97■□□□□ 0.79
GGA2-213ENST00000568922 GRIN2AQ12879 1464 aa19.94■□□□□ 0.78
GGA2-213ENST00000568922 RANGAP1P46060 587 aaPredicted RBP19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms