RNA–Protein interactions for RNA: ENST00000374358.4

TMEM50A-201, Transcript of transmembrane protein 50A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM50A, Length 2,683 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM50A-201ENST00000374358 NISCHQ9Y2I1 1504 aa32.44■■■□□ 2.78
TMEM50A-201ENST00000374358 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.06
TMEM50A-201ENST00000374358 CCDC180Q9P1Z9 1646 aa27.51■■□□□ 1.99
TMEM50A-201ENST00000374358 ZCCHC6Q5VYS8 1495 aaKnown RBP27.44■■□□□ 1.98
TMEM50A-201ENST00000374358 SUPT5HO00267 1087 aaKnown RBP27.28■■□□□ 1.96
TMEM50A-201ENST00000374358 DCAF8L2P0C7V8 631 aa27.13■■□□□ 1.93
TMEM50A-201ENST00000374358 DCAF1Q9Y4B6 1507 aa26.48■■□□□ 1.83
TMEM50A-201ENST00000374358 CHIC1Q5VXU3 224 aa26.41■■□□□ 1.82
TMEM50A-201ENST00000374358 MYO15BQ96JP2 1530 aa26.4■■□□□ 1.82
TMEM50A-201ENST00000374358 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
TMEM50A-201ENST00000374358 ABCC9O60706 1549 aa25.9■■□□□ 1.74
TMEM50A-201ENST00000374358 LOC105371045A0A1W2PR82 267 aa25.74■■□□□ 1.71
TMEM50A-201ENST00000374358 RSF1Q96T23 1441 aaPredicted RBP25.71■■□□□ 1.71
TMEM50A-201ENST00000374358 PCGF6Q9BYE7 350 aa25.64■■□□□ 1.69
TMEM50A-201ENST00000374358 RB1CC1Q8TDY2 1594 aa25.52■■□□□ 1.68
TMEM50A-201ENST00000374358 HRCP23327 699 aa25.5■■□□□ 1.67
TMEM50A-201ENST00000374358 NACADO15069 1562 aa25.45■■□□□ 1.66
TMEM50A-201ENST00000374358 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
TMEM50A-201ENST00000374358 TRIM41Q8WV44 630 aa25.31■■□□□ 1.64
TMEM50A-201ENST00000374358 MROH2BQ7Z745 1585 aa25.3■■□□□ 1.64
TMEM50A-201ENST00000374358 FAM9AQ8IZU1 332 aaPredicted RBP25.26■■□□□ 1.63
TMEM50A-201ENST00000374358 WIZO95785 1651 aa25.19■■□□□ 1.62
TMEM50A-201ENST00000374358 PPARGC1BQ86YN6 1023 aaKnown RBP25.18■■□□□ 1.62
TMEM50A-201ENST00000374358 EHMT2Q96KQ7 1210 aa25.17■■□□□ 1.62
TMEM50A-201ENST00000374358 TRIM26Q12899 539 aaPredicted RBP25.01■■□□□ 1.59
TMEM50A-201ENST00000374358 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
TMEM50A-201ENST00000374358 UNC13AQ9UPW8 1703 aa24.83■■□□□ 1.57
TMEM50A-201ENST00000374358 EIF4G1Q04637 1599 aaKnown RBP24.76■■□□□ 1.55
TMEM50A-201ENST00000374358 SMARCA4P51532 1647 aa24.73■■□□□ 1.55
TMEM50A-201ENST00000374358 TOP2AP11388 1531 aaKnown RBP24.68■■□□□ 1.54
TMEM50A-201ENST00000374358 ABCC8Q09428 1581 aa24.67■■□□□ 1.54
TMEM50A-201ENST00000374358 PABPN1Q86U42 306 aaKnown RBP eCLIP24.67■■□□□ 1.54
TMEM50A-201ENST00000374358 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
TMEM50A-201ENST00000374358 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
TMEM50A-201ENST00000374358 BICRAQ9NZM4 1560 aa24.49■■□□□ 1.51
TMEM50A-201ENST00000374358 SOGA1O94964 1423 aa24.4■■□□□ 1.5
TMEM50A-201ENST00000374358 TTBK1Q5TCY1 1321 aaPredicted RBP24.33■■□□□ 1.49
TMEM50A-201ENST00000374358 RUSC2Q8N2Y8 1516 aa24.32■■□□□ 1.48
TMEM50A-201ENST00000374358 ZEB1P37275 1124 aaPredicted RBP24.31■■□□□ 1.48
TMEM50A-201ENST00000374358 CEP162Q5TB80 1403 aa24.22■■□□□ 1.47
TMEM50A-201ENST00000374358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.19■■□□□ 1.46
TMEM50A-201ENST00000374358 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
TMEM50A-201ENST00000374358 CSRNP3Q8WYN3 585 aa24.17■■□□□ 1.46
TMEM50A-201ENST00000374358 UBTFP17480 764 aaKnown RBP24.14■■□□□ 1.46
TMEM50A-201ENST00000374358 WRNQ14191 1432 aaPredicted RBP eCLIP24.14■■□□□ 1.45
TMEM50A-201ENST00000374358 ATAD2BQ9ULI0 1458 aa24.11■■□□□ 1.45
TMEM50A-201ENST00000374358 TNIKQ9UKE5 1360 aa24.09■■□□□ 1.45
TMEM50A-201ENST00000374358 SYNJ1O43426 1573 aa24.08■■□□□ 1.45
TMEM50A-201ENST00000374358 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
TMEM50A-201ENST00000374358 EEA1Q15075 1411 aa24.04■■□□□ 1.44
TMEM50A-201ENST00000374358 CCER1Q8TC90 406 aaPredicted RBP24.03■■□□□ 1.44
TMEM50A-201ENST00000374358 GOLGA3Q08378 1498 aa23.99■■□□□ 1.43
TMEM50A-201ENST00000374358 RANGAP1P46060 587 aaPredicted RBP23.85■■□□□ 1.41
TMEM50A-201ENST00000374358 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
TMEM50A-201ENST00000374358 KIF21BO75037 1637 aa23.8■■□□□ 1.4
TMEM50A-201ENST00000374358 RAPGEF2Q9Y4G8 1499 aa23.79■■□□□ 1.4
TMEM50A-201ENST00000374358 CLIP1P30622 1438 aa23.76■■□□□ 1.39
TMEM50A-201ENST00000374358 TOP2BQ02880 1626 aa23.7■■□□□ 1.38
TMEM50A-201ENST00000374358 HNRNPUL2Q1KMD3 747 aaKnown RBP23.65■■□□□ 1.38
TMEM50A-201ENST00000374358 VPS8Q8N3P4 1428 aa23.62■■□□□ 1.37
TMEM50A-201ENST00000374358 BIVM-ERCC5R4GMW8 1640 aa23.59■■□□□ 1.37
TMEM50A-201ENST00000374358 NCAPD3P42695 1498 aa23.58■■□□□ 1.37
TMEM50A-201ENST00000374358 HMGXB3Q12766 1538 aa23.56■■□□□ 1.36
TMEM50A-201ENST00000374358 SCAF1Q9H7N4 1312 aaKnown RBP23.55■■□□□ 1.36
TMEM50A-201ENST00000374358 CUX1P39880 1505 aa23.54■■□□□ 1.36
TMEM50A-201ENST00000374358 DIEXFQ68CQ4 756 aaKnown RBP23.51■■□□□ 1.35
TMEM50A-201ENST00000374358 APLP2Q06481 763 aa23.51■■□□□ 1.35
TMEM50A-201ENST00000374358 PRXQ9BXM0 1461 aa23.46■■□□□ 1.35
TMEM50A-201ENST00000374358 CFTRP13569 1480 aa23.42■■□□□ 1.34
TMEM50A-201ENST00000374358 ERICH3Q5RHP9 1530 aa23.4■■□□□ 1.34
TMEM50A-201ENST00000374358 ARAP1Q96P48 1450 aa23.4■■□□□ 1.34
TMEM50A-201ENST00000374358 KIF27Q86VH2 1401 aa23.36■■□□□ 1.33
TMEM50A-201ENST00000374358 KANK4Q5T7N3 995 aaPredicted RBP23.34■■□□□ 1.33
TMEM50A-201ENST00000374358 NEUROD1Q13562 356 aa23.33■■□□□ 1.33
TMEM50A-201ENST00000374358 ZNF316A6NFI3 1004 aaPredicted RBP23.31■■□□□ 1.32
TMEM50A-201ENST00000374358 ACIN1Q9UKV3 1341 aaKnown RBP23.26■■□□□ 1.31
TMEM50A-201ENST00000374358 CUX2O14529 1486 aa23.22■■□□□ 1.31
TMEM50A-201ENST00000374358 ARHGAP35Q9NRY4 1499 aa23.2■■□□□ 1.3
TMEM50A-201ENST00000374358 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
TMEM50A-201ENST00000374358 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
TMEM50A-201ENST00000374358 IGF1RP08069 1367 aa23.14■■□□□ 1.3
TMEM50A-201ENST00000374358 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
TMEM50A-201ENST00000374358 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
TMEM50A-201ENST00000374358 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
TMEM50A-201ENST00000374358 ITGAEP38570 1179 aa23.08■■□□□ 1.29
TMEM50A-201ENST00000374358 DHX57Q6P158 1386 aaKnown RBP23.08■■□□□ 1.29
TMEM50A-201ENST00000374358 MIER1Q8N108 512 aa23.07■■□□□ 1.28
TMEM50A-201ENST00000374358 CENPBP07199 599 aaPredicted RBP23.06■■□□□ 1.28
TMEM50A-201ENST00000374358 GTF3C3Q9Y5Q9 886 aa23.06■■□□□ 1.28
TMEM50A-201ENST00000374358 CARMIL1Q5VZK9 1371 aa23.04■■□□□ 1.28
TMEM50A-201ENST00000374358 RRBP1Q9P2E9 1410 aaKnown RBP23.04■■□□□ 1.28
TMEM50A-201ENST00000374358 FANCD2Q9BXW9 1451 aa22.99■■□□□ 1.27
TMEM50A-201ENST00000374358 P3H3Q8IVL6 736 aa22.99■■□□□ 1.27
TMEM50A-201ENST00000374358 CCNB3Q8WWL7 1395 aa22.99■■□□□ 1.27
TMEM50A-201ENST00000374358 RAD54L2Q9Y4B4 1467 aa22.96■■□□□ 1.27
TMEM50A-201ENST00000374358 NESP48681 1621 aa22.96■■□□□ 1.27
TMEM50A-201ENST00000374358 TIAM1Q13009 1591 aa22.9■■□□□ 1.26
TMEM50A-201ENST00000374358 ATP1B4Q9UN42 357 aaPredicted RBP22.89■■□□□ 1.26
TMEM50A-201ENST00000374358 CLSPNQ9HAW4 1339 aa22.87■■□□□ 1.25
TMEM50A-201ENST00000374358 POLA1P09884 1462 aaPredicted RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms