Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.48
SHROOM3Q8TF72 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.33■■□□□ 1.48
SHROOM3Q8TF72 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.32■■□□□ 1.48
SHROOM3Q8TF72 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SHROOM3Q8TF72 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.32■■□□□ 1.48
SHROOM3Q8TF72 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 AC022211.4-201ENST00000625094 2161 ntBASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC24.31■■□□□ 1.48
SHROOM3Q8TF72 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHROOM3Q8TF72 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SHROOM3Q8TF72 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.29■■□□□ 1.48
SHROOM3Q8TF72 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SHROOM3Q8TF72 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.29■■□□□ 1.48
SHROOM3Q8TF72 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SHROOM3Q8TF72 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHROOM3Q8TF72 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 KRT18P10-201ENST00000388836 1287 ntBASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.27■■□□□ 1.48
SHROOM3Q8TF72 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC24.26■■□□□ 1.47
SHROOM3Q8TF72 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
SHROOM3Q8TF72 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHROOM3Q8TF72 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SHROOM3Q8TF72 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 SLC6A10P-202ENST00000431994 2058 ntBASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.24■■□□□ 1.47
SHROOM3Q8TF72 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 AC004987.1-201ENST00000428627 508 ntBASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHROOM3Q8TF72 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 MED17-227ENST00000640521 2047 ntTSL 5 BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHROOM3Q8TF72 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SHROOM3Q8TF72 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SHROOM3Q8TF72 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SHROOM3Q8TF72 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.21■■□□□ 1.47
SHROOM3Q8TF72 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SHROOM3Q8TF72 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
SHROOM3Q8TF72 RPS2P7-201ENST00000447334 885 ntBASIC24.2■■□□□ 1.46
SHROOM3Q8TF72 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SHROOM3Q8TF72 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.19■■□□□ 1.46
SHROOM3Q8TF72 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC24.19■■□□□ 1.46
SHROOM3Q8TF72 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms