Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CSMD3Q7Z407 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.8■□□□□ 0.28
CSMD3Q7Z407 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 AF131216.4-201ENST00000638924 1588 ntBASIC16.8■□□□□ 0.28
CSMD3Q7Z407 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSMD3Q7Z407 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSMD3Q7Z407 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSMD3Q7Z407 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC16.79■□□□□ 0.28
CSMD3Q7Z407 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC16.79■□□□□ 0.28
CSMD3Q7Z407 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC16.79■□□□□ 0.28
CSMD3Q7Z407 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.78■□□□□ 0.28
CSMD3Q7Z407 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 PROC-203ENST00000409048 1586 ntTSL 5 BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSMD3Q7Z407 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CSMD3Q7Z407 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.76■□□□□ 0.27
CSMD3Q7Z407 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSMD3Q7Z407 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 AL162430.1-201ENST00000480705 870 ntBASIC16.74■□□□□ 0.27
CSMD3Q7Z407 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 MTDHP2-201ENST00000601468 714 ntBASIC16.74■□□□□ 0.27
CSMD3Q7Z407 AL355001.2-201ENST00000620617 1191 ntBASIC16.74■□□□□ 0.27
CSMD3Q7Z407 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 AC097381.1-201ENST00000429019 1296 ntBASIC16.74■□□□□ 0.27
CSMD3Q7Z407 AC142381.2-201ENST00000566120 298 ntBASIC16.74■□□□□ 0.27
CSMD3Q7Z407 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSMD3Q7Z407 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 PLD4-205ENST00000553861 667 ntTSL 2 BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 AC087623.3-201ENST00000607047 1098 ntBASIC16.73■□□□□ 0.27
CSMD3Q7Z407 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSMD3Q7Z407 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 LINC01003-201ENST00000564834 1764 ntBASIC16.72■□□□□ 0.27
CSMD3Q7Z407 AC090192.1-201ENST00000517740 490 ntBASIC16.72■□□□□ 0.27
CSMD3Q7Z407 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 AL356740.2-201ENST00000601559 647 ntBASIC16.72■□□□□ 0.27
CSMD3Q7Z407 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC16.72■□□□□ 0.27
CSMD3Q7Z407 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms