Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
COL17A1Q9UMD9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC37.03■■■■□ 3.52
COL17A1Q9UMD9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC37.03■■■■□ 3.52
COL17A1Q9UMD9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
COL17A1Q9UMD9 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 AC105265.2-201ENST00000467189 838 ntBASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
COL17A1Q9UMD9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 AP002414.2-202ENST00000590929 1450 ntBASIC37.01■■■■□ 3.52
COL17A1Q9UMD9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 AC097381.1-201ENST00000429019 1296 ntBASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 AC087623.3-201ENST00000607047 1098 ntBASIC37.01■■■■□ 3.51
COL17A1Q9UMD9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC37■■■■□ 3.51
COL17A1Q9UMD9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC37■■■■□ 3.51
COL17A1Q9UMD9 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC37■■■■□ 3.51
COL17A1Q9UMD9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC37■■■■□ 3.51
COL17A1Q9UMD9 AK3-203ENST00000447596 705 ntTSL 2 BASIC37■■■■□ 3.51
COL17A1Q9UMD9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
COL17A1Q9UMD9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC36.99■■■■□ 3.51
COL17A1Q9UMD9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC36.99■■■■□ 3.51
COL17A1Q9UMD9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC36.98■■■■□ 3.51
COL17A1Q9UMD9 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC36.98■■■■□ 3.51
COL17A1Q9UMD9 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC36.98■■■■□ 3.51
COL17A1Q9UMD9 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC36.98■■■■□ 3.51
COL17A1Q9UMD9 UNC93B3-201ENST00000308076 687 ntBASIC36.97■■■■□ 3.51
COL17A1Q9UMD9 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC36.97■■■■□ 3.51
COL17A1Q9UMD9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC36.96■■■■□ 3.51
COL17A1Q9UMD9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
COL17A1Q9UMD9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC36.95■■■■□ 3.51
COL17A1Q9UMD9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
COL17A1Q9UMD9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 AL136162.1-201ENST00000607711 1078 ntBASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC36.94■■■■□ 3.5
COL17A1Q9UMD9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC36.93■■■■□ 3.5
COL17A1Q9UMD9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC36.92■■■■□ 3.5
COL17A1Q9UMD9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
COL17A1Q9UMD9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC36.91■■■■□ 3.5
COL17A1Q9UMD9 AC090192.1-201ENST00000517740 490 ntBASIC36.91■■■■□ 3.5
COL17A1Q9UMD9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
COL17A1Q9UMD9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
COL17A1Q9UMD9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC36.9■■■■□ 3.5
COL17A1Q9UMD9 EDA-201ENST00000338901 1233 ntBASIC36.9■■■■□ 3.5
COL17A1Q9UMD9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC36.9■■■■□ 3.5
COL17A1Q9UMD9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC36.9■■■■□ 3.5
COL17A1Q9UMD9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
COL17A1Q9UMD9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
COL17A1Q9UMD9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.5
COL17A1Q9UMD9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC36.88■■■■□ 3.5
COL17A1Q9UMD9 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC36.88■■■■□ 3.49
COL17A1Q9UMD9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
COL17A1Q9UMD9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
COL17A1Q9UMD9 CD72-202ENST00000378430 585 ntTSL 3 BASIC36.88■■■■□ 3.49
COL17A1Q9UMD9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC36.87■■■■□ 3.49
COL17A1Q9UMD9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC36.87■■■■□ 3.49
COL17A1Q9UMD9 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC36.86■■■■□ 3.49
COL17A1Q9UMD9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
COL17A1Q9UMD9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
COL17A1Q9UMD9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC36.86■■■■□ 3.49
COL17A1Q9UMD9 RARRES2P11-201ENST00000635158 484 ntBASIC36.86■■■■□ 3.49
COL17A1Q9UMD9 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 KRT18P10-201ENST00000388836 1287 ntBASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 AC024257.2-201ENST00000549699 147 ntBASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 AL136967.2-201ENST00000623968 743 ntBASIC36.85■■■■□ 3.49
COL17A1Q9UMD9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
COL17A1Q9UMD9 AL355001.2-201ENST00000620617 1191 ntBASIC36.84■■■■□ 3.49
COL17A1Q9UMD9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC36.84■■■■□ 3.49
COL17A1Q9UMD9 ST7-AS1-201ENST00000456775 1889 ntBASIC36.83■■■■□ 3.49
COL17A1Q9UMD9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC36.83■■■■□ 3.49
COL17A1Q9UMD9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC36.83■■■■□ 3.49
COL17A1Q9UMD9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC36.82■■■■□ 3.49
COL17A1Q9UMD9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC36.82■■■■□ 3.49
COL17A1Q9UMD9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC36.82■■■■□ 3.49
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms