Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SHANK1Q9Y566 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
SHANK1Q9Y566 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SHANK1Q9Y566 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.89■■□□□ 1.1
SHANK1Q9Y566 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.89■■□□□ 1.1
SHANK1Q9Y566 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
SHANK1Q9Y566 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SHANK1Q9Y566 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK1Q9Y566 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK1Q9Y566 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SHANK1Q9Y566 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.89■■□□□ 1.09
SHANK1Q9Y566 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK1Q9Y566 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SHANK1Q9Y566 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK1Q9Y566 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK1Q9Y566 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SHANK1Q9Y566 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 AC110285.6-201ENST00000617652 491 ntBASIC21.87■■□□□ 1.09
SHANK1Q9Y566 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.87■■□□□ 1.09
SHANK1Q9Y566 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.86■■□□□ 1.09
SHANK1Q9Y566 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SHANK1Q9Y566 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.86■■□□□ 1.09
SHANK1Q9Y566 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 AC137630.3-201ENST00000607245 391 ntBASIC21.85■■□□□ 1.09
SHANK1Q9Y566 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK1Q9Y566 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK1Q9Y566 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SHANK1Q9Y566 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK1Q9Y566 KRT18P24-201ENST00000344739 1156 ntBASIC21.83■■□□□ 1.09
SHANK1Q9Y566 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.83■■□□□ 1.09
SHANK1Q9Y566 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK1Q9Y566 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.83■■□□□ 1.08
SHANK1Q9Y566 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.83■■□□□ 1.08
SHANK1Q9Y566 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK1Q9Y566 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK1Q9Y566 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 AL139246.5-201ENST00000606645 996 ntBASIC21.8■■□□□ 1.08
SHANK1Q9Y566 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SHANK1Q9Y566 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms