Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.87■■□□□ 1.41
VPS9D1Q9Y2B5 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VPS9D1Q9Y2B5 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
VPS9D1Q9Y2B5 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.86■■□□□ 1.41
VPS9D1Q9Y2B5 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS9D1Q9Y2B5 AC093536.1-201ENST00000569153 554 ntBASIC23.85■■□□□ 1.41
VPS9D1Q9Y2B5 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.85■■□□□ 1.41
VPS9D1Q9Y2B5 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS9D1Q9Y2B5 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS9D1Q9Y2B5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.85■■□□□ 1.41
VPS9D1Q9Y2B5 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC23.84■■□□□ 1.41
VPS9D1Q9Y2B5 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS9D1Q9Y2B5 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.4
VPS9D1Q9Y2B5 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 RNF126P1-201ENST00000567452 1320 ntBASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
VPS9D1Q9Y2B5 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS9D1Q9Y2B5 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 AC097639.1-201ENST00000565519 1891 ntBASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
VPS9D1Q9Y2B5 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS9D1Q9Y2B5 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
VPS9D1Q9Y2B5 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
VPS9D1Q9Y2B5 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.79■■□□□ 1.4
VPS9D1Q9Y2B5 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
VPS9D1Q9Y2B5 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS9D1Q9Y2B5 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
VPS9D1Q9Y2B5 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 KRT18P10-201ENST00000388836 1287 ntBASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS9D1Q9Y2B5 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 RAP2CP1-202ENST00000605179 643 ntBASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS9D1Q9Y2B5 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS9D1Q9Y2B5 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
VPS9D1Q9Y2B5 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS9D1Q9Y2B5 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS9D1Q9Y2B5 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS9D1Q9Y2B5 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 AC026202.3-201ENST00000600805 1127 ntBASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS9D1Q9Y2B5 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS9D1Q9Y2B5 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS9D1Q9Y2B5 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms