Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AC120024.1-201ENST00000562672 995 ntBASIC29.62■■■□□ 2.33
ZC3H4Q9UPT8 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.62■■■□□ 2.33
ZC3H4Q9UPT8 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 AL356740.2-201ENST00000601559 647 ntBASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 MIR4466-201ENST00000606121 54 ntBASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
ZC3H4Q9UPT8 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
ZC3H4Q9UPT8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
ZC3H4Q9UPT8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC29.6■■■□□ 2.33
ZC3H4Q9UPT8 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.6■■■□□ 2.33
ZC3H4Q9UPT8 AC010997.5-201ENST00000609182 354 ntBASIC29.6■■■□□ 2.33
ZC3H4Q9UPT8 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
ZC3H4Q9UPT8 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC29.59■■■□□ 2.33
ZC3H4Q9UPT8 MIR5787-201ENST00000611784 55 ntBASIC29.59■■■□□ 2.33
ZC3H4Q9UPT8 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC29.59■■■□□ 2.33
ZC3H4Q9UPT8 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
ZC3H4Q9UPT8 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
ZC3H4Q9UPT8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.58■■■□□ 2.33
ZC3H4Q9UPT8 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC29.57■■■□□ 2.32
ZC3H4Q9UPT8 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.56■■■□□ 2.32
ZC3H4Q9UPT8 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.55■■■□□ 2.32
ZC3H4Q9UPT8 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
ZC3H4Q9UPT8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
ZC3H4Q9UPT8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.53■■■□□ 2.32
ZC3H4Q9UPT8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
ZC3H4Q9UPT8 AC135279.3-201ENST00000610945 1311 ntBASIC29.53■■■□□ 2.32
ZC3H4Q9UPT8 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
ZC3H4Q9UPT8 MTDHP2-201ENST00000601468 714 ntBASIC29.52■■■□□ 2.32
ZC3H4Q9UPT8 AL512631.2-201ENST00000604634 923 ntBASIC29.52■■■□□ 2.32
ZC3H4Q9UPT8 AC106739.1-201ENST00000617035 715 ntBASIC29.52■■■□□ 2.32
ZC3H4Q9UPT8 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
ZC3H4Q9UPT8 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
ZC3H4Q9UPT8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
ZC3H4Q9UPT8 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.51■■■□□ 2.32
ZC3H4Q9UPT8 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.51■■■□□ 2.32
ZC3H4Q9UPT8 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC29.51■■■□□ 2.32
ZC3H4Q9UPT8 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
ZC3H4Q9UPT8 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
ZC3H4Q9UPT8 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
ZC3H4Q9UPT8 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.5■■■□□ 2.31
ZC3H4Q9UPT8 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
ZC3H4Q9UPT8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
ZC3H4Q9UPT8 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
ZC3H4Q9UPT8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC29.48■■■□□ 2.31
ZC3H4Q9UPT8 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC29.48■■■□□ 2.31
ZC3H4Q9UPT8 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.48■■■□□ 2.31
ZC3H4Q9UPT8 AC142381.2-201ENST00000566120 298 ntBASIC29.48■■■□□ 2.31
ZC3H4Q9UPT8 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.47■■■□□ 2.31
ZC3H4Q9UPT8 MIR4281-201ENST00000580852 62 ntBASIC29.47■■■□□ 2.31
ZC3H4Q9UPT8 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
ZC3H4Q9UPT8 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
ZC3H4Q9UPT8 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
ZC3H4Q9UPT8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
ZC3H4Q9UPT8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.46■■■□□ 2.31
ZC3H4Q9UPT8 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.46■■■□□ 2.31
ZC3H4Q9UPT8 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.46■■■□□ 2.31
ZC3H4Q9UPT8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.45■■■□□ 2.31
ZC3H4Q9UPT8 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.45■■■□□ 2.31
ZC3H4Q9UPT8 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
ZC3H4Q9UPT8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.45■■■□□ 2.31
ZC3H4Q9UPT8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC29.45■■■□□ 2.3
ZC3H4Q9UPT8 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
ZC3H4Q9UPT8 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.45■■■□□ 2.3
ZC3H4Q9UPT8 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
ZC3H4Q9UPT8 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC29.44■■■□□ 2.3
ZC3H4Q9UPT8 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC29.43■■■□□ 2.3
ZC3H4Q9UPT8 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.43■■■□□ 2.3
ZC3H4Q9UPT8 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
ZC3H4Q9UPT8 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.42■■■□□ 2.3
ZC3H4Q9UPT8 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
ZC3H4Q9UPT8 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
ZC3H4Q9UPT8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.42■■■□□ 2.3
ZC3H4Q9UPT8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
ZC3H4Q9UPT8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms