Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
CCDC144BQ3MJ40 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.89■■■□□ 2.06
CCDC144BQ3MJ40 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
CCDC144BQ3MJ40 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.89■■■□□ 2.06
CCDC144BQ3MJ40 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
CCDC144BQ3MJ40 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.89■■■□□ 2.05
CCDC144BQ3MJ40 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
CCDC144BQ3MJ40 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 AC103834.1-201ENST00000520383 144 ntBASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 PVT1_1.1-201ENST00000615125 194 ntBASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CCDC144BQ3MJ40 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC144BQ3MJ40 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC144BQ3MJ40 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.86■■■□□ 2.05
CCDC144BQ3MJ40 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC144BQ3MJ40 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC144BQ3MJ40 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.85■■■□□ 2.05
CCDC144BQ3MJ40 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
CCDC144BQ3MJ40 AC020928.2-201ENST00000588717 2197 ntBASIC27.84■■■□□ 2.05
CCDC144BQ3MJ40 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC27.84■■■□□ 2.05
CCDC144BQ3MJ40 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
CCDC144BQ3MJ40 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
CCDC144BQ3MJ40 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 YBX1P4-201ENST00000392794 808 ntBASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
CCDC144BQ3MJ40 WHAMMP3-201ENST00000611636 1609 ntBASIC27.81■■■□□ 2.04
CCDC144BQ3MJ40 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
CCDC144BQ3MJ40 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27.81■■■□□ 2.04
CCDC144BQ3MJ40 AC009299.2-201ENST00000482477 511 ntBASIC27.81■■■□□ 2.04
CCDC144BQ3MJ40 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC144BQ3MJ40 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC144BQ3MJ40 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC144BQ3MJ40 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC144BQ3MJ40 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
CCDC144BQ3MJ40 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.79■■■□□ 2.04
CCDC144BQ3MJ40 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
CCDC144BQ3MJ40 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
CCDC144BQ3MJ40 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
CCDC144BQ3MJ40 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CCDC144BQ3MJ40 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
CCDC144BQ3MJ40 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.76■■■□□ 2.03
CCDC144BQ3MJ40 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC144BQ3MJ40 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
CCDC144BQ3MJ40 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC144BQ3MJ40 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC27.76■■■□□ 2.03
CCDC144BQ3MJ40 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 MIR4508-201ENST00000584178 70 ntBASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC144BQ3MJ40 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
CCDC144BQ3MJ40 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 IDNK-201ENST00000376417 511 ntTSL 5 BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC144BQ3MJ40 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.73■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms