Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL18A1P39060 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL18A1P39060 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.46■■■□□ 2.79
COL18A1P39060 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC32.45■■■□□ 2.79
COL18A1P39060 AC021242.3-201ENST00000607598 1377 ntBASIC32.45■■■□□ 2.79
COL18A1P39060 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC32.45■■■□□ 2.78
COL18A1P39060 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC32.45■■■□□ 2.78
COL18A1P39060 DRD5P2-201ENST00000421395 2012 ntBASIC32.45■■■□□ 2.78
COL18A1P39060 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
COL18A1P39060 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC32.44■■■□□ 2.78
COL18A1P39060 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.44■■■□□ 2.78
COL18A1P39060 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
COL18A1P39060 PEMT-206ENST00000435340 960 ntTSL 5 BASIC32.44■■■□□ 2.78
COL18A1P39060 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC32.44■■■□□ 2.78
COL18A1P39060 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
COL18A1P39060 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.43■■■□□ 2.78
COL18A1P39060 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC32.43■■■□□ 2.78
COL18A1P39060 MIR4281-201ENST00000580852 62 ntBASIC32.42■■■□□ 2.78
COL18A1P39060 KRT18P10-201ENST00000388836 1287 ntBASIC32.42■■■□□ 2.78
COL18A1P39060 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL18A1P39060 MIR935-201ENST00000401179 91 ntBASIC32.41■■■□□ 2.78
COL18A1P39060 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
COL18A1P39060 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL18A1P39060 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC32.41■■■□□ 2.78
COL18A1P39060 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL18A1P39060 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC32.4■■■□□ 2.78
COL18A1P39060 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL18A1P39060 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
COL18A1P39060 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC32.4■■■□□ 2.78
COL18A1P39060 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC32.4■■■□□ 2.78
COL18A1P39060 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC32.39■■■□□ 2.78
COL18A1P39060 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC32.39■■■□□ 2.78
COL18A1P39060 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC32.39■■■□□ 2.78
COL18A1P39060 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC32.39■■■□□ 2.78
COL18A1P39060 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
COL18A1P39060 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL18A1P39060 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
COL18A1P39060 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC32.38■■■□□ 2.77
COL18A1P39060 AC120024.1-201ENST00000562672 995 ntBASIC32.38■■■□□ 2.77
COL18A1P39060 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC32.37■■■□□ 2.77
COL18A1P39060 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC32.37■■■□□ 2.77
COL18A1P39060 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
COL18A1P39060 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC32.37■■■□□ 2.77
COL18A1P39060 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
COL18A1P39060 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
COL18A1P39060 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
COL18A1P39060 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC32.36■■■□□ 2.77
COL18A1P39060 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL18A1P39060 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC32.35■■■□□ 2.77
COL18A1P39060 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC32.35■■■□□ 2.77
COL18A1P39060 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.35■■■□□ 2.77
COL18A1P39060 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.35■■■□□ 2.77
COL18A1P39060 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC32.34■■■□□ 2.77
COL18A1P39060 LINC01003-201ENST00000564834 1764 ntBASIC32.34■■■□□ 2.77
COL18A1P39060 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL18A1P39060 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC32.33■■■□□ 2.77
COL18A1P39060 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC32.33■■■□□ 2.77
COL18A1P39060 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC32.32■■■□□ 2.77
COL18A1P39060 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC32.32■■■□□ 2.77
COL18A1P39060 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC32.32■■■□□ 2.77
COL18A1P39060 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
COL18A1P39060 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC32.32■■■□□ 2.76
COL18A1P39060 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
COL18A1P39060 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
COL18A1P39060 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL18A1P39060 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL18A1P39060 SENP5-202ENST00000419026 973 ntTSL 3 BASIC32.31■■■□□ 2.76
COL18A1P39060 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
COL18A1P39060 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
COL18A1P39060 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
COL18A1P39060 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC32.3■■■□□ 2.76
COL18A1P39060 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC32.3■■■□□ 2.76
COL18A1P39060 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC32.3■■■□□ 2.76
COL18A1P39060 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC32.3■■■□□ 2.76
COL18A1P39060 TRIR-202ENST00000588213 841 ntTSL 3 BASIC32.3■■■□□ 2.76
COL18A1P39060 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
COL18A1P39060 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC32.29■■■□□ 2.76
COL18A1P39060 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL18A1P39060 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
COL18A1P39060 AC092028.1-203ENST00000608262 953 ntBASIC32.28■■■□□ 2.76
COL18A1P39060 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL18A1P39060 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC32.28■■■□□ 2.76
COL18A1P39060 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
COL18A1P39060 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL18A1P39060 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL18A1P39060 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC32.27■■■□□ 2.76
COL18A1P39060 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC32.27■■■□□ 2.76
COL18A1P39060 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL18A1P39060 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL18A1P39060 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC32.27■■■□□ 2.76
COL18A1P39060 TSPY9P-201ENST00000440215 945 ntBASIC32.27■■■□□ 2.76
COL18A1P39060 TSPY11P-201ENST00000442607 1045 ntBASIC32.27■■■□□ 2.76
COL18A1P39060 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
COL18A1P39060 AC142472.1-201ENST00000612013 1741 ntBASIC32.26■■■□□ 2.76
COL18A1P39060 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC32.26■■■□□ 2.76
COL18A1P39060 AL117332.1-201ENST00000622628 974 ntBASIC32.26■■■□□ 2.75
COL18A1P39060 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
COL18A1P39060 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC32.26■■■□□ 2.75
COL18A1P39060 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC32.26■■■□□ 2.75
COL18A1P39060 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms