Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC18.21■□□□□ 0.51
HLA-DMBP28068 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DMBP28068 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.21■□□□□ 0.5
HLA-DMBP28068 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DMBP28068 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DMBP28068 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DMBP28068 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DMBP28068 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DMBP28068 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DMBP28068 AC022211.4-201ENST00000625094 2161 ntBASIC18.2■□□□□ 0.5
HLA-DMBP28068 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DMBP28068 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DMBP28068 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DMBP28068 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DMBP28068 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.19■□□□□ 0.5
HLA-DMBP28068 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HLA-DMBP28068 HSD17B1P1-201ENST00000590052 955 ntBASIC18.19■□□□□ 0.5
HLA-DMBP28068 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DMBP28068 AC138932.3-201ENST00000567634 1902 ntBASIC18.19■□□□□ 0.5
HLA-DMBP28068 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC18.19■□□□□ 0.5
HLA-DMBP28068 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DMBP28068 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HLA-DMBP28068 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HLA-DMBP28068 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.18■□□□□ 0.5
HLA-DMBP28068 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DMBP28068 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HLA-DMBP28068 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
HLA-DMBP28068 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
HLA-DMBP28068 AC142381.3-201ENST00000568208 1670 ntBASIC18.17■□□□□ 0.5
HLA-DMBP28068 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.17■□□□□ 0.5
HLA-DMBP28068 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.17■□□□□ 0.5
HLA-DMBP28068 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DMBP28068 AC126177.7-201ENST00000547904 679 ntBASIC18.16■□□□□ 0.5
HLA-DMBP28068 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DMBP28068 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.16■□□□□ 0.5
HLA-DMBP28068 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HLA-DMBP28068 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.15■□□□□ 0.5
HLA-DMBP28068 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC18.15■□□□□ 0.5
HLA-DMBP28068 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.15■□□□□ 0.5
HLA-DMBP28068 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.15■□□□□ 0.5
HLA-DMBP28068 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HLA-DMBP28068 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HLA-DMBP28068 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HLA-DMBP28068 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DMBP28068 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.14■□□□□ 0.49
HLA-DMBP28068 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DMBP28068 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HLA-DMBP28068 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HLA-DMBP28068 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DMBP28068 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DMBP28068 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DMBP28068 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC18.13■□□□□ 0.49
HLA-DMBP28068 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.13■□□□□ 0.49
HLA-DMBP28068 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DMBP28068 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DMBP28068 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.13■□□□□ 0.49
HLA-DMBP28068 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.13■□□□□ 0.49
HLA-DMBP28068 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HLA-DMBP28068 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DMBP28068 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DMBP28068 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DMBP28068 BRD4-212ENST00000630599 726 ntTSL 2 BASIC18.12■□□□□ 0.49
HLA-DMBP28068 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HLA-DMBP28068 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DMBP28068 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
HLA-DMBP28068 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DMBP28068 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HLA-DMBP28068 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DMBP28068 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DMBP28068 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DMBP28068 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HLA-DMBP28068 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HLA-DMBP28068 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms