Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL1P22362 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL1P22362 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCL1P22362 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCL1P22362 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.76■□□□□ 0.91
CCL1P22362 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
CCL1P22362 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 AC060814.1-201ENST00000554326 538 ntBASIC20.76■□□□□ 0.91
CCL1P22362 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCL1P22362 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL1P22362 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.75■□□□□ 0.91
CCL1P22362 AC097639.1-201ENST00000565519 1891 ntBASIC20.75■□□□□ 0.91
CCL1P22362 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL1P22362 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCL1P22362 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL1P22362 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCL1P22362 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCL1P22362 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCL1P22362 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.73■□□□□ 0.91
CCL1P22362 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCL1P22362 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCL1P22362 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCL1P22362 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.73■□□□□ 0.91
CCL1P22362 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.73■□□□□ 0.91
CCL1P22362 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
CCL1P22362 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.73■□□□□ 0.91
CCL1P22362 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCL1P22362 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCL1P22362 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.72■□□□□ 0.91
CCL1P22362 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCL1P22362 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCL1P22362 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCL1P22362 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCL1P22362 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL1P22362 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL1P22362 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL1P22362 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCL1P22362 MIR3960-201ENST00000583311 91 ntBASIC20.71■□□□□ 0.91
CCL1P22362 MIR7108-201ENST00000614319 87 ntBASIC20.71■□□□□ 0.91
CCL1P22362 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCL1P22362 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCL1P22362 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCL1P22362 AL139125.2-201ENST00000623134 1869 ntBASIC20.71■□□□□ 0.91
CCL1P22362 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCL1P22362 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCL1P22362 AC092296.2-201ENST00000589470 999 ntBASIC20.7■□□□□ 0.9
CCL1P22362 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.7■□□□□ 0.9
CCL1P22362 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCL1P22362 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CCL1P22362 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCL1P22362 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CCL1P22362 MIR639-201ENST00000384974 98 ntBASIC20.69■□□□□ 0.9
CCL1P22362 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.69■□□□□ 0.9
CCL1P22362 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CCL1P22362 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.68■□□□□ 0.9
CCL1P22362 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CCL1P22362 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CCL1P22362 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
CCL1P22362 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.67■□□□□ 0.9
CCL1P22362 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.67■□□□□ 0.9
CCL1P22362 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.67■□□□□ 0.9
CCL1P22362 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.67■□□□□ 0.9
CCL1P22362 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CCL1P22362 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.67■□□□□ 0.9
CCL1P22362 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCL1P22362 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CCL1P22362 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCL1P22362 SMPD5-203ENST00000639008 1464 ntBASIC20.66■□□□□ 0.9
CCL1P22362 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CCL1P22362 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.66■□□□□ 0.9
CCL1P22362 SLC6A10P-202ENST00000431994 2058 ntBASIC20.66■□□□□ 0.9
CCL1P22362 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCL1P22362 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCL1P22362 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.65■□□□□ 0.9
CCL1P22362 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CCL1P22362 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.65■□□□□ 0.9
CCL1P22362 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCL1P22362 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.64■□□□□ 0.9
CCL1P22362 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCL1P22362 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
CCL1P22362 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms