Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRIM49BA6NDI0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TRIM49BA6NDI0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 PKM-204ENST00000449901 2526 ntTSL 2 BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 AC092296.2-201ENST00000589470 999 ntBASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
TRIM49BA6NDI0 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
TRIM49BA6NDI0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
TRIM49BA6NDI0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
TRIM49BA6NDI0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 AC022211.4-201ENST00000625094 2161 ntBASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
TRIM49BA6NDI0 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TRIM49BA6NDI0 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
TRIM49BA6NDI0 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
TRIM49BA6NDI0 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.5■■□□□ 1.83
TRIM49BA6NDI0 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM49BA6NDI0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM49BA6NDI0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
TRIM49BA6NDI0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.49■■□□□ 1.83
TRIM49BA6NDI0 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TRIM49BA6NDI0 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.48■■□□□ 1.83
TRIM49BA6NDI0 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.48■■□□□ 1.83
TRIM49BA6NDI0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC26.48■■□□□ 1.83
TRIM49BA6NDI0 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
TRIM49BA6NDI0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 AC022413.1-201ENST00000624602 984 ntBASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 SMPD5-203ENST00000639008 1464 ntBASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 AC138932.3-201ENST00000567634 1902 ntBASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TRIM49BA6NDI0 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
TRIM49BA6NDI0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.46■■□□□ 1.83
TRIM49BA6NDI0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.46■■□□□ 1.83
TRIM49BA6NDI0 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
TRIM49BA6NDI0 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.46■■□□□ 1.83
TRIM49BA6NDI0 AC142381.3-201ENST00000568208 1670 ntBASIC26.45■■□□□ 1.82
TRIM49BA6NDI0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TRIM49BA6NDI0 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TRIM49BA6NDI0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
TRIM49BA6NDI0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
TRIM49BA6NDI0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM49BA6NDI0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM49BA6NDI0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.44■■□□□ 1.82
TRIM49BA6NDI0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
TRIM49BA6NDI0 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.43■■□□□ 1.82
TRIM49BA6NDI0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
TRIM49BA6NDI0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
TRIM49BA6NDI0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 MIR3960-201ENST00000583311 91 ntBASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TRIM49BA6NDI0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TRIM49BA6NDI0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TRIM49BA6NDI0 MIR4449-201ENST00000578365 66 ntBASIC26.41■■□□□ 1.82
TRIM49BA6NDI0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TRIM49BA6NDI0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
TRIM49BA6NDI0 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
TRIM49BA6NDI0 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
TRIM49BA6NDI0 AC093323.1-202ENST00000635031 2045 ntBASIC26.39■■□□□ 1.82
TRIM49BA6NDI0 AC097639.1-201ENST00000565519 1891 ntBASIC26.39■■□□□ 1.82
TRIM49BA6NDI0 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.39■■□□□ 1.82
TRIM49BA6NDI0 ECEL1P2-201ENST00000461596 1295 ntBASIC26.39■■□□□ 1.82
TRIM49BA6NDI0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.38■■□□□ 1.81
TRIM49BA6NDI0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TRIM49BA6NDI0 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
TRIM49BA6NDI0 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TRIM49BA6NDI0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TRIM49BA6NDI0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms