Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.26■■□□□ 1.79
NKX2-4Q9H2Z4 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NKX2-4Q9H2Z4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 AC022616.5-201ENST00000518796 181 ntBASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 AC110285.6-201ENST00000617652 491 ntBASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
NKX2-4Q9H2Z4 KRT18P24-201ENST00000344739 1156 ntBASIC26.24■■□□□ 1.79
NKX2-4Q9H2Z4 AC137630.3-201ENST00000607245 391 ntBASIC26.24■■□□□ 1.79
NKX2-4Q9H2Z4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.23■■□□□ 1.79
NKX2-4Q9H2Z4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
NKX2-4Q9H2Z4 AC005837.3-201ENST00000612163 286 ntBASIC26.23■■□□□ 1.79
NKX2-4Q9H2Z4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
NKX2-4Q9H2Z4 ABCB10P3-201ENST00000561950 2166 ntBASIC26.23■■□□□ 1.79
NKX2-4Q9H2Z4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
NKX2-4Q9H2Z4 AC021242.3-201ENST00000607598 1377 ntBASIC26.21■■□□□ 1.79
NKX2-4Q9H2Z4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.21■■□□□ 1.79
NKX2-4Q9H2Z4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NKX2-4Q9H2Z4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NKX2-4Q9H2Z4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.2■■□□□ 1.78
NKX2-4Q9H2Z4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.19■■□□□ 1.78
NKX2-4Q9H2Z4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NKX2-4Q9H2Z4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.19■■□□□ 1.78
NKX2-4Q9H2Z4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.19■■□□□ 1.78
NKX2-4Q9H2Z4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
NKX2-4Q9H2Z4 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
NKX2-4Q9H2Z4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
NKX2-4Q9H2Z4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.18■■□□□ 1.78
NKX2-4Q9H2Z4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.18■■□□□ 1.78
NKX2-4Q9H2Z4 WHAMMP3-201ENST00000611636 1609 ntBASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 AC092028.1-203ENST00000608262 953 ntBASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 AC092666.2-201ENST00000613287 246 ntBASIC26.17■■□□□ 1.78
NKX2-4Q9H2Z4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NKX2-4Q9H2Z4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
NKX2-4Q9H2Z4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
NKX2-4Q9H2Z4 AC096631.2-201ENST00000436136 790 ntBASIC26.16■■□□□ 1.78
NKX2-4Q9H2Z4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.16■■□□□ 1.78
NKX2-4Q9H2Z4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.15■■□□□ 1.78
NKX2-4Q9H2Z4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-4Q9H2Z4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-4Q9H2Z4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NKX2-4Q9H2Z4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NKX2-4Q9H2Z4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.14■■□□□ 1.78
NKX2-4Q9H2Z4 AL117332.1-201ENST00000622628 974 ntBASIC26.14■■□□□ 1.78
NKX2-4Q9H2Z4 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC26.14■■□□□ 1.77
NKX2-4Q9H2Z4 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 AC120024.1-201ENST00000562672 995 ntBASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
NKX2-4Q9H2Z4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.12■■□□□ 1.77
NKX2-4Q9H2Z4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.12■■□□□ 1.77
NKX2-4Q9H2Z4 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
NKX2-4Q9H2Z4 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX2-4Q9H2Z4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.1■■□□□ 1.77
NKX2-4Q9H2Z4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC26.1■■□□□ 1.77
NKX2-4Q9H2Z4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-4Q9H2Z4 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-4Q9H2Z4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-4Q9H2Z4 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-4Q9H2Z4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-4Q9H2Z4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC26.08■■□□□ 1.77
NKX2-4Q9H2Z4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.08■■□□□ 1.77
NKX2-4Q9H2Z4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-4Q9H2Z4 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.08■■□□□ 1.77
NKX2-4Q9H2Z4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-4Q9H2Z4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.07■■□□□ 1.76
NKX2-4Q9H2Z4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-4Q9H2Z4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-4Q9H2Z4 MIR3621-201ENST00000580529 85 ntBASIC26.07■■□□□ 1.76
NKX2-4Q9H2Z4 AL139393.2-201ENST00000608721 2025 ntBASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms