Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.38■□□□□ 0.69
CX3CL1P78423 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.38■□□□□ 0.69
CX3CL1P78423 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CX3CL1P78423 ECEL1P2-201ENST00000461596 1295 ntBASIC19.38■□□□□ 0.69
CX3CL1P78423 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.38■□□□□ 0.69
CX3CL1P78423 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CX3CL1P78423 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CX3CL1P78423 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
CX3CL1P78423 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.37■□□□□ 0.69
CX3CL1P78423 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CX3CL1P78423 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CX3CL1P78423 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CX3CL1P78423 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CX3CL1P78423 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CX3CL1P78423 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CX3CL1P78423 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.36■□□□□ 0.69
CX3CL1P78423 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.36■□□□□ 0.69
CX3CL1P78423 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CX3CL1P78423 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.36■□□□□ 0.69
CX3CL1P78423 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CX3CL1P78423 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
CX3CL1P78423 SMPD5-203ENST00000639008 1464 ntBASIC19.35■□□□□ 0.69
CX3CL1P78423 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CX3CL1P78423 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CX3CL1P78423 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CX3CL1P78423 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CX3CL1P78423 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CX3CL1P78423 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CX3CL1P78423 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.34■□□□□ 0.69
CX3CL1P78423 AC025884.2-201ENST00000553429 711 ntBASIC19.34■□□□□ 0.69
CX3CL1P78423 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC19.34■□□□□ 0.69
CX3CL1P78423 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.34■□□□□ 0.69
CX3CL1P78423 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CX3CL1P78423 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
CX3CL1P78423 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CX3CL1P78423 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.33■□□□□ 0.69
CX3CL1P78423 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CX3CL1P78423 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.33■□□□□ 0.68
CX3CL1P78423 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CX3CL1P78423 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.32■□□□□ 0.68
CX3CL1P78423 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CL1P78423 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.32■□□□□ 0.68
CX3CL1P78423 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.32■□□□□ 0.68
CX3CL1P78423 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.32■□□□□ 0.68
CX3CL1P78423 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CL1P78423 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CL1P78423 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CL1P78423 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CX3CL1P78423 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.32■□□□□ 0.68
CX3CL1P78423 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.32■□□□□ 0.68
CX3CL1P78423 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.31■□□□□ 0.68
CX3CL1P78423 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CX3CL1P78423 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CL1P78423 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CL1P78423 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CX3CL1P78423 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.3■□□□□ 0.68
CX3CL1P78423 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CX3CL1P78423 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CL1P78423 RNF126P1-201ENST00000567452 1320 ntBASIC19.29■□□□□ 0.68
CX3CL1P78423 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CL1P78423 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CL1P78423 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.29■□□□□ 0.68
CX3CL1P78423 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CX3CL1P78423 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.29■□□□□ 0.68
CX3CL1P78423 MIR3960-201ENST00000583311 91 ntBASIC19.29■□□□□ 0.68
CX3CL1P78423 AC091060.1-201ENST00000623524 1766 ntBASIC19.29■□□□□ 0.68
CX3CL1P78423 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CX3CL1P78423 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CL1P78423 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CL1P78423 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.28■□□□□ 0.68
CX3CL1P78423 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CX3CL1P78423 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.28■□□□□ 0.68
CX3CL1P78423 HSD17B1P1-201ENST00000590052 955 ntBASIC19.28■□□□□ 0.68
CX3CL1P78423 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.28■□□□□ 0.68
CX3CL1P78423 AC092803.2-201ENST00000564287 1899 ntBASIC19.28■□□□□ 0.68
CX3CL1P78423 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.28■□□□□ 0.68
CX3CL1P78423 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CX3CL1P78423 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CX3CL1P78423 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.27■□□□□ 0.68
CX3CL1P78423 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.27■□□□□ 0.68
CX3CL1P78423 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CX3CL1P78423 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CX3CL1P78423 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CL1P78423 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CL1P78423 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
CX3CL1P78423 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.26■□□□□ 0.67
CX3CL1P78423 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.26■□□□□ 0.67
CX3CL1P78423 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CL1P78423 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CX3CL1P78423 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CX3CL1P78423 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.26■□□□□ 0.67
CX3CL1P78423 AC020928.2-201ENST00000588717 2197 ntBASIC19.25■□□□□ 0.67
CX3CL1P78423 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CX3CL1P78423 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CX3CL1P78423 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms