Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TSPY13P-201ENST00000338964 914 ntBASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AC060814.1-201ENST00000554326 538 ntBASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AC092803.2-201ENST00000564287 1899 ntBASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AL157400.5-201ENST00000507624 621 ntBASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC32.45■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 AC022413.1-201ENST00000624602 984 ntBASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U85056.1-201ENST00000616429 682 ntBASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC004987.1-201ENST00000428627 508 ntBASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC135731.1-201ENST00000569415 2548 ntBASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ATP5G2P3-201ENST00000429083 425 ntBASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AL451085.2-201ENST00000605085 799 ntBASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AC145676.1-201ENST00000514988 2004 ntBASIC32.29■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.29■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms