Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP1AQ9HD42 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP1AQ9HD42 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 DUSP8P4-201ENST00000399538 1761 ntBASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP1AQ9HD42 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CHMP1AQ9HD42 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CHMP1AQ9HD42 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.64■□□□□ 0.89
CHMP1AQ9HD42 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHMP1AQ9HD42 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.64■□□□□ 0.89
CHMP1AQ9HD42 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHMP1AQ9HD42 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHMP1AQ9HD42 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CHMP1AQ9HD42 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHMP1AQ9HD42 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CHMP1AQ9HD42 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.58■□□□□ 0.89
CHMP1AQ9HD42 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP1AQ9HD42 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CHMP1AQ9HD42 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.58■□□□□ 0.89
CHMP1AQ9HD42 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CHMP1AQ9HD42 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP1AQ9HD42 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP1AQ9HD42 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP1AQ9HD42 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP1AQ9HD42 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP1AQ9HD42 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
CHMP1AQ9HD42 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms