RNA–Protein interactions for RNA: ENST00000394086.7

RARA-203, Transcript of retinoic acid receptor alpha, humanhuman

TSL 2 BASIC

Gene RARA, Length 2,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-203ENST00000394086 NISCHQ9Y2I1 1504 aa52.17■■■■■ 5.94
RARA-203ENST00000394086 CCDC180Q9P1Z9 1646 aa46.13■■■■■ 4.98
RARA-203ENST00000394086 ABCC9O60706 1549 aa45■■■■■ 4.79
RARA-203ENST00000394086 DCAF8L2P0C7V8 631 aa43.68■■■■■ 4.58
RARA-203ENST00000394086 ZCCHC6Q5VYS8 1495 aaKnown RBP43.5■■■■■ 4.55
RARA-203ENST00000394086 NACADO15069 1562 aa43.36■■■■■ 4.53
RARA-203ENST00000394086 RB1CC1Q8TDY2 1594 aa43.33■■■■■ 4.53
RARA-203ENST00000394086 MYO15BQ96JP2 1530 aa43.16■■■■■ 4.5
RARA-203ENST00000394086 DCAF1Q9Y4B6 1507 aa43.11■■■■■ 4.49
RARA-203ENST00000394086 UNC13AQ9UPW8 1703 aa42.32■■■■■ 4.36
RARA-203ENST00000394086 SCRIBQ14160 1630 aa42.25■■■■■ 4.35
RARA-203ENST00000394086 PABPN1Q86U42 306 aaKnown RBP eCLIP42.19■■■■■ 4.34
RARA-203ENST00000394086 BICRAQ9NZM4 1560 aa42.01■■■■■ 4.32
RARA-203ENST00000394086 SHROOM4Q9ULL8 1493 aa41.57■■■■■ 4.25
RARA-203ENST00000394086 DNAJC5BQ9UF47 199 aa41.06■■■■■ 4.16
RARA-203ENST00000394086 EIF4G1Q04637 1599 aaKnown RBP40.89■■■■■ 4.14
RARA-203ENST00000394086 CECR2Q9BXF3 1484 aa40.66■■■■■ 4.1
RARA-203ENST00000394086 CC2D2AQ9P2K1 1620 aa40.66■■■■■ 4.1
RARA-203ENST00000394086 BAZ1AQ9NRL2 1556 aaPredicted RBP40.39■■■■■ 4.06
RARA-203ENST00000394086 SMARCA4P51532 1647 aa40.39■■■■■ 4.06
RARA-203ENST00000394086 MROH2BQ7Z745 1585 aa40.24■■■■■ 4.03
RARA-203ENST00000394086 ATAD2BQ9ULI0 1458 aa40.12■■■■■ 4.01
RARA-203ENST00000394086 SMARCA2P51531 1590 aa40.06■■■■■ 4
RARA-203ENST00000394086 NCAPD3P42695 1498 aa40.04■■■■■ 4
RARA-203ENST00000394086 PEG3Q9GZU2 1588 aa39.94■■■■□ 3.98
RARA-203ENST00000394086 RSF1Q96T23 1441 aaPredicted RBP39.91■■■■□ 3.98
RARA-203ENST00000394086 BAZ1BQ9UIG0 1483 aaKnown RBP39.82■■■■□ 3.97
RARA-203ENST00000394086 HMGXB3Q12766 1538 aa39.82■■■■□ 3.96
RARA-203ENST00000394086 WIZO95785 1651 aa39.81■■■■□ 3.96
RARA-203ENST00000394086 TOP2AP11388 1531 aaKnown RBP39.38■■■■□ 3.89
RARA-203ENST00000394086 SUPT5HO00267 1087 aaKnown RBP39.3■■■■□ 3.88
RARA-203ENST00000394086 NESP48681 1621 aa39.03■■■■□ 3.84
RARA-203ENST00000394086 CCDC88BA6NC98 1476 aa38.97■■■■□ 3.83
RARA-203ENST00000394086 CADPSQ9ULU8 1353 aa38.93■■■■□ 3.82
RARA-203ENST00000394086 LAMC3Q9Y6N6 1575 aa38.89■■■■□ 3.82
RARA-203ENST00000394086 ERCC6Q03468 1493 aa38.76■■■■□ 3.8
RARA-203ENST00000394086 CFTRP13569 1480 aa38.73■■■■□ 3.79
RARA-203ENST00000394086 PDS5BQ9NTI5 1447 aa38.69■■■■□ 3.78
RARA-203ENST00000394086 KIF21AQ7Z4S6 1674 aa38.5■■■■□ 3.75
RARA-203ENST00000394086 FANCD2Q9BXW9 1451 aa38.47■■■■□ 3.75
RARA-203ENST00000394086 CEP164Q9UPV0 1460 aa38.38■■■■□ 3.73
RARA-203ENST00000394086 PRDM2Q13029 1718 aa38.35■■■■□ 3.73
RARA-203ENST00000394086 THOC2Q8NI27 1593 aaKnown RBP38.27■■■■□ 3.72
RARA-203ENST00000394086 MRC2Q9UBG0 1479 aa38.24■■■■□ 3.71
RARA-203ENST00000394086 CHIC1Q5VXU3 224 aa38.24■■■■□ 3.71
RARA-203ENST00000394086 CUX2O14529 1486 aa38.14■■■■□ 3.7
RARA-203ENST00000394086 WDR62O43379 1518 aa38.08■■■■□ 3.69
RARA-203ENST00000394086 HRCP23327 699 aa38.07■■■■□ 3.69
RARA-203ENST00000394086 URB2Q14146 1524 aaKnown RBP38.06■■■■□ 3.68
RARA-203ENST00000394086 TOPBP1Q92547 1522 aa37.88■■■■□ 3.65
RARA-203ENST00000394086 ABCC8Q09428 1581 aa37.87■■■■□ 3.65
RARA-203ENST00000394086 DNMBPQ6XZF7 1577 aa37.83■■■■□ 3.65
RARA-203ENST00000394086 CUX1P39880 1505 aa37.72■■■■□ 3.63
RARA-203ENST00000394086 WRNQ14191 1432 aaPredicted RBP eCLIP37.63■■■■□ 3.61
RARA-203ENST00000394086 POLA1P09884 1462 aaPredicted RBP37.59■■■■□ 3.61
RARA-203ENST00000394086 FGD5Q6ZNL6 1462 aa37.55■■■■□ 3.6
RARA-203ENST00000394086 IFT140Q96RY7 1462 aa37.55■■■■□ 3.6
RARA-203ENST00000394086 SYNJ1O43426 1573 aa37.49■■■■□ 3.59
RARA-203ENST00000394086 SOGA1O94964 1423 aa37.48■■■■□ 3.59
RARA-203ENST00000394086 RAD54L2Q9Y4B4 1467 aa37.47■■■■□ 3.59
RARA-203ENST00000394086 TOP2BQ02880 1626 aa37.45■■■■□ 3.59
RARA-203ENST00000394086 BIVM-ERCC5R4GMW8 1640 aa37.41■■■■□ 3.58
RARA-203ENST00000394086 TARBP1Q13395 1621 aaKnown RBP37.4■■■■□ 3.58
RARA-203ENST00000394086 ZNF608Q9ULD9 1512 aaPredicted RBP37.4■■■■□ 3.58
RARA-203ENST00000394086 PCGF6Q9BYE7 350 aa37.38■■■■□ 3.57
RARA-203ENST00000394086 TDRD9Q8NDG6 1382 aaKnown RBP37.27■■■■□ 3.56
RARA-203ENST00000394086 AQRO60306 1485 aaKnown RBP eCLIP37.26■■■■□ 3.564e-7■■■■□ 24.2
RARA-203ENST00000394086 EIF4G3O43432 1585 aaKnown RBP37.2■■■■□ 3.55
RARA-203ENST00000394086 ABCA10Q8WWZ4 1543 aa37.18■■■■□ 3.54
RARA-203ENST00000394086 WDR97A6NE52 1622 aa37.13■■■■□ 3.53
RARA-203ENST00000394086 TRIM41Q8WV44 630 aa37.07■■■■□ 3.52
RARA-203ENST00000394086 GAPVD1Q14C86 1478 aa37.03■■■■□ 3.52
RARA-203ENST00000394086 GRIN2BQ13224 1484 aa36.97■■■■□ 3.51
RARA-203ENST00000394086 ABCA5Q8WWZ7 1642 aa36.96■■■■□ 3.51
RARA-203ENST00000394086 TRIM26Q12899 539 aaPredicted RBP36.93■■■■□ 3.5
RARA-203ENST00000394086 SNAPC4Q5SXM2 1469 aa36.88■■■■□ 3.49
RARA-203ENST00000394086 PBRM1Q86U86 1689 aa36.85■■■■□ 3.49
RARA-203ENST00000394086 FBLN2P98095 1184 aa36.83■■■■□ 3.49
RARA-203ENST00000394086 KIF27Q86VH2 1401 aa36.82■■■■□ 3.48
RARA-203ENST00000394086 MAGI1Q96QZ7 1491 aaPredicted RBP36.8■■■■□ 3.48
RARA-203ENST00000394086 LOC105371045A0A1W2PR82 267 aa36.8■■■■□ 3.48
RARA-203ENST00000394086 OSCARQ8IYS5 282 aa36.75■■■■□ 3.47
RARA-203ENST00000394086 CHMP7Q8WUX9 453 aaPredicted RBP36.74■■■■□ 3.47
RARA-203ENST00000394086 ERICH3Q5RHP9 1530 aa36.72■■■■□ 3.47
RARA-203ENST00000394086 DNAJC5Q9H3Z4 198 aa36.69■■■■□ 3.46
RARA-203ENST00000394086 SYNJ2O15056 1496 aa36.68■■■■□ 3.46
RARA-203ENST00000394086 PPARGC1BQ86YN6 1023 aaKnown RBP36.67■■■■□ 3.46
RARA-203ENST00000394086 CHD1O14646 1710 aa36.66■■■■□ 3.46
RARA-203ENST00000394086 IGF1RP08069 1367 aa36.65■■■■□ 3.46
RARA-203ENST00000394086 ZEB1P37275 1124 aaPredicted RBP36.64■■■■□ 3.46
RARA-203ENST00000394086 RUSC2Q8N2Y8 1516 aa36.62■■■■□ 3.45
RARA-203ENST00000394086 FHAD1B1AJZ9 1412 aa36.6■■■■□ 3.45
RARA-203ENST00000394086 ADAMTS12P58397 1594 aa36.6■■■■□ 3.45
RARA-203ENST00000394086 GRIN2AQ12879 1464 aa36.48■■■■□ 3.43
RARA-203ENST00000394086 PELP1Q8IZL8 1130 aaKnown RBP36.47■■■■□ 3.43
RARA-203ENST00000394086 CARMIL1Q5VZK9 1371 aa36.44■■■■□ 3.42
RARA-203ENST00000394086 CUL7Q14999 1698 aa36.43■■■■□ 3.42
RARA-203ENST00000394086 FAM9AQ8IZU1 332 aaPredicted RBP36.35■■■■□ 3.41
RARA-203ENST00000394086 CSRNP3Q8WYN3 585 aa36.3■■■■□ 3.4
RARA-203ENST00000394086 NUP160Q12769 1436 aa36.29■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms