Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX3-1Q99801 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX3-1Q99801 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.05■□□□□ 0.96
NKX3-1Q99801 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX3-1Q99801 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX3-1Q99801 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX3-1Q99801 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.05■□□□□ 0.96
NKX3-1Q99801 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX3-1Q99801 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX3-1Q99801 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX3-1Q99801 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NKX3-1Q99801 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.04■□□□□ 0.96
NKX3-1Q99801 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.04■□□□□ 0.96
NKX3-1Q99801 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX3-1Q99801 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX3-1Q99801 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NKX3-1Q99801 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
NKX3-1Q99801 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.03■□□□□ 0.96
NKX3-1Q99801 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.03■□□□□ 0.96
NKX3-1Q99801 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX3-1Q99801 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX3-1Q99801 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX3-1Q99801 AC010501.1-201ENST00000606270 1962 ntBASIC21.02■□□□□ 0.96
NKX3-1Q99801 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX3-1Q99801 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
NKX3-1Q99801 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX3-1Q99801 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX3-1Q99801 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
NKX3-1Q99801 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX3-1Q99801 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.01■□□□□ 0.95
NKX3-1Q99801 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21■□□□□ 0.95
NKX3-1Q99801 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
NKX3-1Q99801 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.99■□□□□ 0.95
NKX3-1Q99801 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.99■□□□□ 0.95
NKX3-1Q99801 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
NKX3-1Q99801 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX3-1Q99801 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX3-1Q99801 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NKX3-1Q99801 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX3-1Q99801 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX3-1Q99801 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX3-1Q99801 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.99■□□□□ 0.95
NKX3-1Q99801 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX3-1Q99801 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX3-1Q99801 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX3-1Q99801 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX3-1Q99801 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX3-1Q99801 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
NKX3-1Q99801 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX3-1Q99801 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.96■□□□□ 0.95
NKX3-1Q99801 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX3-1Q99801 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.96■□□□□ 0.95
NKX3-1Q99801 HLA-V-202ENST00000446817 847 ntBASIC20.96■□□□□ 0.95
NKX3-1Q99801 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX3-1Q99801 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX3-1Q99801 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
NKX3-1Q99801 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
NKX3-1Q99801 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
NKX3-1Q99801 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.95■□□□□ 0.94
NKX3-1Q99801 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NKX3-1Q99801 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX3-1Q99801 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.94■□□□□ 0.94
NKX3-1Q99801 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX3-1Q99801 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX3-1Q99801 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX3-1Q99801 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX3-1Q99801 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX3-1Q99801 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NKX3-1Q99801 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX3-1Q99801 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX3-1Q99801 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX3-1Q99801 AC096887.2-201ENST00000623443 1957 ntBASIC20.92■□□□□ 0.94
NKX3-1Q99801 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms