Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.05■■□□□ 1.44
SNX3O60493 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SNX3O60493 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC24.05■■□□□ 1.44
SNX3O60493 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC24.05■■□□□ 1.44
SNX3O60493 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SNX3O60493 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
SNX3O60493 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SNX3O60493 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SNX3O60493 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SNX3O60493 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SNX3O60493 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SNX3O60493 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.04■■□□□ 1.44
SNX3O60493 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SNX3O60493 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SNX3O60493 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
SNX3O60493 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
SNX3O60493 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SNX3O60493 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SNX3O60493 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC24.02■■□□□ 1.44
SNX3O60493 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
SNX3O60493 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
SNX3O60493 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
SNX3O60493 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
SNX3O60493 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.01■■□□□ 1.43
SNX3O60493 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.01■■□□□ 1.43
SNX3O60493 WHAMMP3-201ENST00000611636 1609 ntBASIC24.01■■□□□ 1.43
SNX3O60493 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
SNX3O60493 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
SNX3O60493 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SNX3O60493 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
SNX3O60493 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24■■□□□ 1.43
SNX3O60493 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
SNX3O60493 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX3O60493 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX3O60493 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.99■■□□□ 1.43
SNX3O60493 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX3O60493 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.99■■□□□ 1.43
SNX3O60493 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
SNX3O60493 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
SNX3O60493 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.98■■□□□ 1.43
SNX3O60493 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.98■■□□□ 1.43
SNX3O60493 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
SNX3O60493 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX3O60493 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.98■■□□□ 1.43
SNX3O60493 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SNX3O60493 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX3O60493 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
SNX3O60493 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
SNX3O60493 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC23.98■■□□□ 1.43
SNX3O60493 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.97■■□□□ 1.43
SNX3O60493 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
SNX3O60493 AC079834.2-201ENST00000609776 1949 ntBASIC23.97■■□□□ 1.43
SNX3O60493 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
SNX3O60493 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
SNX3O60493 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.96■■□□□ 1.43
SNX3O60493 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.96■■□□□ 1.43
SNX3O60493 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.96■■□□□ 1.43
SNX3O60493 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SNX3O60493 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SNX3O60493 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.96■■□□□ 1.43
SNX3O60493 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
SNX3O60493 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.95■■□□□ 1.43
SNX3O60493 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
SNX3O60493 LINC00273-201ENST00000539813 1452 ntBASIC23.95■■□□□ 1.42
SNX3O60493 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
SNX3O60493 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
SNX3O60493 LINC00543-201ENST00000567234 1845 ntBASIC23.95■■□□□ 1.42
SNX3O60493 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SNX3O60493 LINC01124-201ENST00000409786 2117 ntBASIC23.95■■□□□ 1.42
SNX3O60493 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
SNX3O60493 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.94■■□□□ 1.42
SNX3O60493 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.94■■□□□ 1.42
SNX3O60493 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.94■■□□□ 1.42
SNX3O60493 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.94■■□□□ 1.42
SNX3O60493 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX3O60493 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
SNX3O60493 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.93■■□□□ 1.42
SNX3O60493 AL391121.1-201ENST00000607967 1349 ntBASIC23.93■■□□□ 1.42
SNX3O60493 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX3O60493 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX3O60493 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SNX3O60493 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
SNX3O60493 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX3O60493 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX3O60493 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX3O60493 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SNX3O60493 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SNX3O60493 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.91■■□□□ 1.42
SNX3O60493 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.91■■□□□ 1.42
SNX3O60493 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX3O60493 AC097639.1-201ENST00000565519 1891 ntBASIC23.91■■□□□ 1.42
SNX3O60493 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
SNX3O60493 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SNX3O60493 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SNX3O60493 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms