Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A5A8TX70 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A5A8TX70 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A5A8TX70 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COL6A5A8TX70 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A5A8TX70 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A5A8TX70 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A5A8TX70 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A5A8TX70 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A5A8TX70 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
COL6A5A8TX70 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
COL6A5A8TX70 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.51■□□□□ 0.71
COL6A5A8TX70 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A5A8TX70 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.51■□□□□ 0.71
COL6A5A8TX70 AC087623.3-201ENST00000607047 1098 ntBASIC19.51■□□□□ 0.71
COL6A5A8TX70 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A5A8TX70 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC19.51■□□□□ 0.71
COL6A5A8TX70 TSPY9P-201ENST00000440215 945 ntBASIC19.5■□□□□ 0.71
COL6A5A8TX70 TSPY11P-201ENST00000442607 1045 ntBASIC19.5■□□□□ 0.71
COL6A5A8TX70 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.5■□□□□ 0.71
COL6A5A8TX70 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.5■□□□□ 0.71
COL6A5A8TX70 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
COL6A5A8TX70 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.5■□□□□ 0.71
COL6A5A8TX70 AC092028.1-203ENST00000608262 953 ntBASIC19.5■□□□□ 0.71
COL6A5A8TX70 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.49■□□□□ 0.71
COL6A5A8TX70 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.49■□□□□ 0.71
COL6A5A8TX70 AC106739.1-201ENST00000617035 715 ntBASIC19.49■□□□□ 0.71
COL6A5A8TX70 AL162430.1-201ENST00000480705 870 ntBASIC19.48■□□□□ 0.71
COL6A5A8TX70 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A5A8TX70 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
COL6A5A8TX70 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A5A8TX70 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL6A5A8TX70 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL6A5A8TX70 RPS2P7-201ENST00000447334 885 ntBASIC19.47■□□□□ 0.71
COL6A5A8TX70 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A5A8TX70 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL6A5A8TX70 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL6A5A8TX70 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A5A8TX70 AC090192.1-201ENST00000517740 490 ntBASIC19.46■□□□□ 0.71
COL6A5A8TX70 AC142381.2-201ENST00000566120 298 ntBASIC19.46■□□□□ 0.71
COL6A5A8TX70 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.46■□□□□ 0.71
COL6A5A8TX70 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A5A8TX70 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A5A8TX70 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL6A5A8TX70 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A5A8TX70 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A5A8TX70 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A5A8TX70 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A5A8TX70 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A5A8TX70 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A5A8TX70 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
COL6A5A8TX70 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A5A8TX70 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A5A8TX70 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A5A8TX70 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A5A8TX70 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COL6A5A8TX70 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A5A8TX70 MIR6821-201ENST00000617625 74 ntBASIC19.43■□□□□ 0.7
COL6A5A8TX70 AC021242.3-201ENST00000607598 1377 ntBASIC19.43■□□□□ 0.7
COL6A5A8TX70 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A5A8TX70 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
COL6A5A8TX70 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A5A8TX70 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.43■□□□□ 0.7
COL6A5A8TX70 AC137630.3-201ENST00000607245 391 ntBASIC19.43■□□□□ 0.7
COL6A5A8TX70 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A5A8TX70 AL117332.1-201ENST00000622628 974 ntBASIC19.43■□□□□ 0.7
COL6A5A8TX70 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A5A8TX70 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A5A8TX70 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A5A8TX70 KRT18P24-201ENST00000344739 1156 ntBASIC19.42■□□□□ 0.7
COL6A5A8TX70 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.42■□□□□ 0.7
COL6A5A8TX70 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A5A8TX70 AL031432.3-201ENST00000607698 485 ntBASIC19.42■□□□□ 0.7
COL6A5A8TX70 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A5A8TX70 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
COL6A5A8TX70 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC19.41■□□□□ 0.7
COL6A5A8TX70 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A5A8TX70 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A5A8TX70 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A5A8TX70 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A5A8TX70 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A5A8TX70 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A5A8TX70 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A5A8TX70 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
COL6A5A8TX70 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A5A8TX70 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A5A8TX70 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A5A8TX70 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A5A8TX70 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A5A8TX70 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A5A8TX70 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A5A8TX70 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A5A8TX70 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A5A8TX70 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A5A8TX70 AC097381.1-201ENST00000429019 1296 ntBASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms