Protein–RNA interactions for Protein: A0A0A0MS06

TRBV23-1, T-cell receptor beta variable 23-1 (non-functional) (Fragment), humanhuman

Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV23-1A0A0A0MS06 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 HSD17B1P1-201ENST00000590052 955 ntBASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRBV23-1A0A0A0MS06 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TRBV23-1A0A0A0MS06 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRBV23-1A0A0A0MS06 ECEL1P2-201ENST00000461596 1295 ntBASIC20.37■□□□□ 0.85
TRBV23-1A0A0A0MS06 AL157400.5-201ENST00000507624 621 ntBASIC20.37■□□□□ 0.85
TRBV23-1A0A0A0MS06 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRBV23-1A0A0A0MS06 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRBV23-1A0A0A0MS06 RNF126P1-201ENST00000567452 1320 ntBASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRBV23-1A0A0A0MS06 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
TRBV23-1A0A0A0MS06 AC142472.1-201ENST00000612013 1741 ntBASIC20.33■□□□□ 0.85
TRBV23-1A0A0A0MS06 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRBV23-1A0A0A0MS06 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRBV23-1A0A0A0MS06 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRBV23-1A0A0A0MS06 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRBV23-1A0A0A0MS06 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRBV23-1A0A0A0MS06 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.31■□□□□ 0.84
TRBV23-1A0A0A0MS06 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
TRBV23-1A0A0A0MS06 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.31■□□□□ 0.84
TRBV23-1A0A0A0MS06 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRBV23-1A0A0A0MS06 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRBV23-1A0A0A0MS06 AL359504.2-201ENST00000605506 1601 ntBASIC20.3■□□□□ 0.84
TRBV23-1A0A0A0MS06 AP004609.3-201ENST00000610705 1884 ntBASIC20.3■□□□□ 0.84
TRBV23-1A0A0A0MS06 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRBV23-1A0A0A0MS06 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRBV23-1A0A0A0MS06 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRBV23-1A0A0A0MS06 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRBV23-1A0A0A0MS06 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRBV23-1A0A0A0MS06 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 AC025884.2-201ENST00000553429 711 ntBASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 SMPD5-203ENST00000639008 1464 ntBASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRBV23-1A0A0A0MS06 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRBV23-1A0A0A0MS06 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 RARRES2P2-201ENST00000394842 485 ntBASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 MIR3960-201ENST00000583311 91 ntBASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.26■□□□□ 0.83
TRBV23-1A0A0A0MS06 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRBV23-1A0A0A0MS06 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.25■□□□□ 0.83
TRBV23-1A0A0A0MS06 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.25■□□□□ 0.83
TRBV23-1A0A0A0MS06 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRBV23-1A0A0A0MS06 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 AL121749.1-202ENST00000609313 2153 ntBASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRBV23-1A0A0A0MS06 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.23■□□□□ 0.83
TRBV23-1A0A0A0MS06 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRBV23-1A0A0A0MS06 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRBV23-1A0A0A0MS06 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.23■□□□□ 0.83
TRBV23-1A0A0A0MS06 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.23■□□□□ 0.83
TRBV23-1A0A0A0MS06 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms