Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CISHQ9NSE2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.3■■□□□ 1.8
CISHQ9NSE2 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CISHQ9NSE2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC26.3■■□□□ 1.8
CISHQ9NSE2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CISHQ9NSE2 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CISHQ9NSE2 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CISHQ9NSE2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CISHQ9NSE2 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.29■■□□□ 1.8
CISHQ9NSE2 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CISHQ9NSE2 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CISHQ9NSE2 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CISHQ9NSE2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
CISHQ9NSE2 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
CISHQ9NSE2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC26.28■■□□□ 1.8
CISHQ9NSE2 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC26.28■■□□□ 1.8
CISHQ9NSE2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
CISHQ9NSE2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CISHQ9NSE2 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CISHQ9NSE2 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.27■■□□□ 1.8
CISHQ9NSE2 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CISHQ9NSE2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CISHQ9NSE2 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CISHQ9NSE2 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.26■■□□□ 1.79
CISHQ9NSE2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC26.26■■□□□ 1.79
CISHQ9NSE2 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CISHQ9NSE2 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
CISHQ9NSE2 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CISHQ9NSE2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC26.25■■□□□ 1.79
CISHQ9NSE2 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CISHQ9NSE2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CISHQ9NSE2 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.24■■□□□ 1.79
CISHQ9NSE2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.24■■□□□ 1.79
CISHQ9NSE2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.23■■□□□ 1.79
CISHQ9NSE2 ECEL1P2-201ENST00000461596 1295 ntBASIC26.23■■□□□ 1.79
CISHQ9NSE2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CISHQ9NSE2 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.22■■□□□ 1.79
CISHQ9NSE2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CISHQ9NSE2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.22■■□□□ 1.79
CISHQ9NSE2 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CISHQ9NSE2 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CISHQ9NSE2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
CISHQ9NSE2 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
CISHQ9NSE2 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CISHQ9NSE2 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.21■■□□□ 1.79
CISHQ9NSE2 HSD17B1P1-201ENST00000590052 955 ntBASIC26.21■■□□□ 1.79
CISHQ9NSE2 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.2■■□□□ 1.79
CISHQ9NSE2 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CISHQ9NSE2 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CISHQ9NSE2 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CISHQ9NSE2 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.2■■□□□ 1.78
CISHQ9NSE2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CISHQ9NSE2 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CISHQ9NSE2 AC025884.2-201ENST00000553429 711 ntBASIC26.19■■□□□ 1.78
CISHQ9NSE2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CISHQ9NSE2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.19■■□□□ 1.78
CISHQ9NSE2 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CISHQ9NSE2 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC26.18■■□□□ 1.78
CISHQ9NSE2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.18■■□□□ 1.78
CISHQ9NSE2 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CISHQ9NSE2 SMPD5-203ENST00000639008 1464 ntBASIC26.17■■□□□ 1.78
CISHQ9NSE2 RNF126P1-201ENST00000567452 1320 ntBASIC26.17■■□□□ 1.78
CISHQ9NSE2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.17■■□□□ 1.78
CISHQ9NSE2 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
CISHQ9NSE2 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
CISHQ9NSE2 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
CISHQ9NSE2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CISHQ9NSE2 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.16■■□□□ 1.78
CISHQ9NSE2 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
CISHQ9NSE2 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.16■■□□□ 1.78
CISHQ9NSE2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CISHQ9NSE2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.15■■□□□ 1.78
CISHQ9NSE2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CISHQ9NSE2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.15■■□□□ 1.78
CISHQ9NSE2 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC26.15■■□□□ 1.78
CISHQ9NSE2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CISHQ9NSE2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CISHQ9NSE2 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CISHQ9NSE2 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CISHQ9NSE2 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC26.14■■□□□ 1.77
CISHQ9NSE2 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CISHQ9NSE2 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
CISHQ9NSE2 REST-210ENST00000638187 1334 ntTSL 5 BASIC26.13■■□□□ 1.77
CISHQ9NSE2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
CISHQ9NSE2 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CISHQ9NSE2 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.12■■□□□ 1.77
CISHQ9NSE2 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.12■■□□□ 1.77
CISHQ9NSE2 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.12■■□□□ 1.77
CISHQ9NSE2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CISHQ9NSE2 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms