Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLRN1P58418 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CLRN1P58418 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.86■■□□□ 1.09
CLRN1P58418 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CLRN1P58418 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLRN1P58418 MIR639-201ENST00000384974 98 ntBASIC21.86■■□□□ 1.09
CLRN1P58418 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
CLRN1P58418 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.85■■□□□ 1.09
CLRN1P58418 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.84■■□□□ 1.09
CLRN1P58418 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLRN1P58418 RPS2-202ENST00000526522 924 ntTSL 2 BASIC21.84■■□□□ 1.09
CLRN1P58418 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLRN1P58418 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLRN1P58418 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.84■■□□□ 1.09
CLRN1P58418 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLRN1P58418 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLRN1P58418 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLRN1P58418 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLRN1P58418 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CLRN1P58418 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN1P58418 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN1P58418 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN1P58418 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.82■■□□□ 1.08
CLRN1P58418 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN1P58418 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.82■■□□□ 1.08
CLRN1P58418 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN1P58418 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.82■■□□□ 1.08
CLRN1P58418 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.81■■□□□ 1.08
CLRN1P58418 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.81■■□□□ 1.08
CLRN1P58418 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN1P58418 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CLRN1P58418 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.8■■□□□ 1.08
CLRN1P58418 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLRN1P58418 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLRN1P58418 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CLRN1P58418 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.79■■□□□ 1.08
CLRN1P58418 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLRN1P58418 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
CLRN1P58418 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLRN1P58418 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.78■■□□□ 1.08
CLRN1P58418 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.78■■□□□ 1.08
CLRN1P58418 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLRN1P58418 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLRN1P58418 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLRN1P58418 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CLRN1P58418 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.77■■□□□ 1.08
CLRN1P58418 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLRN1P58418 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC21.77■■□□□ 1.08
CLRN1P58418 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLRN1P58418 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLRN1P58418 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CLRN1P58418 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN1P58418 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN1P58418 AC091060.1-201ENST00000623524 1766 ntBASIC21.75■■□□□ 1.07
CLRN1P58418 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN1P58418 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN1P58418 AL359504.2-201ENST00000605506 1601 ntBASIC21.75■■□□□ 1.07
CLRN1P58418 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
CLRN1P58418 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CLRN1P58418 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CLRN1P58418 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.74■■□□□ 1.07
CLRN1P58418 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CLRN1P58418 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN1P58418 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN1P58418 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLRN1P58418 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.73■■□□□ 1.07
CLRN1P58418 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN1P58418 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN1P58418 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLRN1P58418 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN1P58418 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CLRN1P58418 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
CLRN1P58418 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLRN1P58418 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLRN1P58418 AC092803.2-201ENST00000564287 1899 ntBASIC21.72■■□□□ 1.07
CLRN1P58418 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CLRN1P58418 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN1P58418 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN1P58418 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN1P58418 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN1P58418 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLRN1P58418 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLRN1P58418 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLRN1P58418 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.7■■□□□ 1.06
CLRN1P58418 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms