Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.78■■□□□ 1.4
FOXA1P55317 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.78■■□□□ 1.4
FOXA1P55317 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.78■■□□□ 1.4
FOXA1P55317 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXA1P55317 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXA1P55317 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.78■■□□□ 1.4
FOXA1P55317 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
FOXA1P55317 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
FOXA1P55317 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
FOXA1P55317 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
FOXA1P55317 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
FOXA1P55317 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
FOXA1P55317 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
FOXA1P55317 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.76■■□□□ 1.39
FOXA1P55317 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
FOXA1P55317 ERN1-208ENST00000606895 2068 ntBASIC23.76■■□□□ 1.39
FOXA1P55317 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
FOXA1P55317 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.76■■□□□ 1.39
FOXA1P55317 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
FOXA1P55317 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.75■■□□□ 1.39
FOXA1P55317 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
FOXA1P55317 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
FOXA1P55317 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
FOXA1P55317 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
FOXA1P55317 DUX4L11-201ENST00000611504 1267 ntBASIC23.75■■□□□ 1.39
FOXA1P55317 DUX4L12-201ENST00000614593 1267 ntBASIC23.75■■□□□ 1.39
FOXA1P55317 DUX4L14-201ENST00000621227 1267 ntBASIC23.75■■□□□ 1.39
FOXA1P55317 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
FOXA1P55317 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.74■■□□□ 1.39
FOXA1P55317 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 MIR219A2-201ENST00000608502 1504 ntBASIC23.73■■□□□ 1.39
FOXA1P55317 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
FOXA1P55317 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.73■■□□□ 1.39
FOXA1P55317 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.72■■□□□ 1.39
FOXA1P55317 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
FOXA1P55317 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
FOXA1P55317 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
FOXA1P55317 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
FOXA1P55317 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
FOXA1P55317 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
FOXA1P55317 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
FOXA1P55317 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
FOXA1P55317 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
FOXA1P55317 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
FOXA1P55317 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
FOXA1P55317 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
FOXA1P55317 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.7■■□□□ 1.38
FOXA1P55317 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
FOXA1P55317 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
FOXA1P55317 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.68■■□□□ 1.38
FOXA1P55317 AC008813.1-201ENST00000536597 885 ntBASIC23.68■■□□□ 1.38
FOXA1P55317 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
FOXA1P55317 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
FOXA1P55317 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
FOXA1P55317 HLA-V-202ENST00000446817 847 ntBASIC23.67■■□□□ 1.38
FOXA1P55317 AC148477.6-201ENST00000623746 465 ntBASIC23.67■■□□□ 1.38
FOXA1P55317 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
FOXA1P55317 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
FOXA1P55317 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.67■■□□□ 1.38
FOXA1P55317 AC010501.1-201ENST00000606270 1962 ntBASIC23.67■■□□□ 1.38
FOXA1P55317 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
FOXA1P55317 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
FOXA1P55317 ZNRF2P2-203ENST00000454624 420 ntBASIC23.66■■□□□ 1.38
FOXA1P55317 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
FOXA1P55317 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.66■■□□□ 1.38
FOXA1P55317 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
FOXA1P55317 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
FOXA1P55317 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.65■■□□□ 1.38
FOXA1P55317 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
FOXA1P55317 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
FOXA1P55317 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
FOXA1P55317 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
FOXA1P55317 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.64■■□□□ 1.38
FOXA1P55317 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.64■■□□□ 1.38
FOXA1P55317 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
FOXA1P55317 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
FOXA1P55317 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.64■■□□□ 1.37
FOXA1P55317 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
FOXA1P55317 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
FOXA1P55317 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
FOXA1P55317 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
FOXA1P55317 CHST11-203ENST00000547956 936 ntTSL 2 BASIC23.63■■□□□ 1.37
FOXA1P55317 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
FOXA1P55317 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms