Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC25.66■■□□□ 1.7
PTPN9P43378 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.66■■□□□ 1.7
PTPN9P43378 AL359504.2-201ENST00000605506 1601 ntBASIC25.66■■□□□ 1.7
PTPN9P43378 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PTPN9P43378 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PTPN9P43378 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PTPN9P43378 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PTPN9P43378 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
PTPN9P43378 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
PTPN9P43378 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.64■■□□□ 1.7
PTPN9P43378 AL157400.5-201ENST00000507624 621 ntBASIC25.64■■□□□ 1.7
PTPN9P43378 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.63■■□□□ 1.69
PTPN9P43378 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.63■■□□□ 1.69
PTPN9P43378 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN9P43378 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN9P43378 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN9P43378 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.63■■□□□ 1.69
PTPN9P43378 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN9P43378 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
PTPN9P43378 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.63■■□□□ 1.69
PTPN9P43378 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
PTPN9P43378 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTPN9P43378 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PTPN9P43378 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN9P43378 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN9P43378 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.61■■□□□ 1.69
PTPN9P43378 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.61■■□□□ 1.69
PTPN9P43378 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN9P43378 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC25.61■■□□□ 1.69
PTPN9P43378 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
PTPN9P43378 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN9P43378 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
PTPN9P43378 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 AC092296.2-201ENST00000589470 999 ntBASIC25.6■■□□□ 1.69
PTPN9P43378 AC022413.1-201ENST00000624602 984 ntBASIC25.6■■□□□ 1.69
PTPN9P43378 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PTPN9P43378 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.6■■□□□ 1.69
PTPN9P43378 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
PTPN9P43378 MOB2-207ENST00000614710 705 ntTSL 5 BASIC25.59■■□□□ 1.69
PTPN9P43378 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.59■■□□□ 1.69
PTPN9P43378 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
PTPN9P43378 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.59■■□□□ 1.69
PTPN9P43378 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
PTPN9P43378 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.58■■□□□ 1.69
PTPN9P43378 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN9P43378 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN9P43378 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN9P43378 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
PTPN9P43378 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
PTPN9P43378 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN9P43378 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.55■■□□□ 1.68
PTPN9P43378 CEP120-209ENST00000515110 606 ntTSL 3 BASIC25.55■■□□□ 1.68
PTPN9P43378 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
PTPN9P43378 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN9P43378 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.54■■□□□ 1.68
PTPN9P43378 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.54■■□□□ 1.68
PTPN9P43378 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN9P43378 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN9P43378 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.54■■□□□ 1.68
PTPN9P43378 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTPN9P43378 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN9P43378 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN9P43378 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN9P43378 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN9P43378 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.53■■□□□ 1.68
PTPN9P43378 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.53■■□□□ 1.68
PTPN9P43378 AC025884.2-201ENST00000553429 711 ntBASIC25.53■■□□□ 1.68
PTPN9P43378 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC25.53■■□□□ 1.68
PTPN9P43378 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTPN9P43378 GPX1-201ENST00000419349 1106 ntBASIC25.52■■□□□ 1.68
PTPN9P43378 ECEL1P2-201ENST00000461596 1295 ntBASIC25.52■■□□□ 1.68
PTPN9P43378 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.52■■□□□ 1.68
PTPN9P43378 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
PTPN9P43378 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.52■■□□□ 1.68
PTPN9P43378 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
PTPN9P43378 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.52■■□□□ 1.68
PTPN9P43378 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.52■■□□□ 1.68
PTPN9P43378 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
PTPN9P43378 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
PTPN9P43378 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.5■■□□□ 1.67
PTPN9P43378 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
PTPN9P43378 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PTPN9P43378 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC25.5■■□□□ 1.67
PTPN9P43378 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.5■■□□□ 1.67
PTPN9P43378 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN9P43378 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN9P43378 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.49■■□□□ 1.67
PTPN9P43378 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN9P43378 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTPN9P43378 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.48■■□□□ 1.67
PTPN9P43378 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTPN9P43378 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.48■■□□□ 1.67
PTPN9P43378 HES4-202ENST00000428771 1040 ntTSL 2 BASIC25.48■■□□□ 1.67
PTPN9P43378 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms