Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
HNF4AP41235 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
HNF4AP41235 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
HNF4AP41235 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.73■■□□□ 1.39
HNF4AP41235 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.73■■□□□ 1.39
HNF4AP41235 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.72■■□□□ 1.39
HNF4AP41235 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
HNF4AP41235 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
HNF4AP41235 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
HNF4AP41235 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
HNF4AP41235 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.71■■□□□ 1.39
HNF4AP41235 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
HNF4AP41235 AL359258.2-201ENST00000564063 1566 ntBASIC23.7■■□□□ 1.38
HNF4AP41235 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HNF4AP41235 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.7■■□□□ 1.38
HNF4AP41235 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
HNF4AP41235 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
HNF4AP41235 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.7■■□□□ 1.38
HNF4AP41235 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC23.7■■□□□ 1.38
HNF4AP41235 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
HNF4AP41235 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC23.69■■□□□ 1.38
HNF4AP41235 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.69■■□□□ 1.38
HNF4AP41235 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
HNF4AP41235 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
HNF4AP41235 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.69■■□□□ 1.38
HNF4AP41235 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.69■■□□□ 1.38
HNF4AP41235 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.69■■□□□ 1.38
HNF4AP41235 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.69■■□□□ 1.38
HNF4AP41235 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
HNF4AP41235 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
HNF4AP41235 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
HNF4AP41235 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HNF4AP41235 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HNF4AP41235 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HNF4AP41235 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
HNF4AP41235 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.68■■□□□ 1.38
HNF4AP41235 AC091060.1-201ENST00000623524 1766 ntBASIC23.68■■□□□ 1.38
HNF4AP41235 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HNF4AP41235 AC126177.7-201ENST00000547904 679 ntBASIC23.67■■□□□ 1.38
HNF4AP41235 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.67■■□□□ 1.38
HNF4AP41235 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HNF4AP41235 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.67■■□□□ 1.38
HNF4AP41235 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.67■■□□□ 1.38
HNF4AP41235 AC135731.1-201ENST00000569415 2548 ntBASIC23.66■■□□□ 1.38
HNF4AP41235 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HNF4AP41235 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HNF4AP41235 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.66■■□□□ 1.38
HNF4AP41235 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HNF4AP41235 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HNF4AP41235 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HNF4AP41235 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HNF4AP41235 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HNF4AP41235 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
HNF4AP41235 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HNF4AP41235 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HNF4AP41235 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HNF4AP41235 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.64■■□□□ 1.37
HNF4AP41235 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.64■■□□□ 1.37
HNF4AP41235 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HNF4AP41235 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.63■■□□□ 1.37
HNF4AP41235 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
HNF4AP41235 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HNF4AP41235 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC23.62■■□□□ 1.37
HNF4AP41235 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HNF4AP41235 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.62■■□□□ 1.37
HNF4AP41235 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HNF4AP41235 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.62■■□□□ 1.37
HNF4AP41235 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.62■■□□□ 1.37
HNF4AP41235 AC145676.1-201ENST00000514988 2004 ntBASIC23.62■■□□□ 1.37
HNF4AP41235 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HNF4AP41235 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
HNF4AP41235 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HNF4AP41235 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.61■■□□□ 1.37
HNF4AP41235 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HNF4AP41235 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
HNF4AP41235 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.61■■□□□ 1.37
HNF4AP41235 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
HNF4AP41235 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HNF4AP41235 AC092803.2-201ENST00000564287 1899 ntBASIC23.6■■□□□ 1.37
HNF4AP41235 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.6■■□□□ 1.37
HNF4AP41235 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.6■■□□□ 1.37
HNF4AP41235 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
HNF4AP41235 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
HNF4AP41235 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HNF4AP41235 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.58■■□□□ 1.37
HNF4AP41235 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HNF4AP41235 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
HNF4AP41235 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms