Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RARRES2P1-201ENST00000474487 481 ntBASIC32.94■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 CHST11-203ENST00000547956 936 ntTSL 2 BASIC32.94■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 AP004609.3-201ENST00000610705 1884 ntBASIC32.94■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC32.93■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC32.93■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC32.93■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC32.92■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC32.92■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC32.91■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC32.9■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 MED25-210ENST00000612854 801 ntTSL 5 BASIC32.9■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 MED25-214ENST00000622402 642 ntTSL 5 BASIC32.9■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC32.89■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 WHAMMP3-201ENST00000611636 1609 ntBASIC32.89■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC32.89■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC32.89■■■□□ 2.86
SENP3-EIF4A1A0A087X0R7 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.88■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.87■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC32.86■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC32.84■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC32.84■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
SENP3-EIF4A1A0A087X0R7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC32.81■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC32.79■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC32.78■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 AC148477.6-201ENST00000623746 465 ntBASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC32.77■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC32.76■■■□□ 2.84
SENP3-EIF4A1A0A087X0R7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC32.76■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 AL359258.2-201ENST00000564063 1566 ntBASIC32.75■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.74■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC32.72■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC32.71■■■□□ 2.83
SENP3-EIF4A1A0A087X0R7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms